FMO05016.5prime Sequence
421 bp (421 high quality bases) assembled on 2008-08-11
> FMO05016.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGGTACAGCAGGGCCTCG
ATGCGACGAACTTTGGTCTGCGGAGCGACTACTCCAGTGAGAACGGCGAT
CATCCATCGTTGTTCGATACGATTAAGGATGGGGATCAGCCGGATATGTG
TGCCTTTTGCCTGGATCGCATACAGAATCCAGAGAAGCTGCACTGCAATC
ATGCGTTCTGCAAAAGCTGTTTAGCACTGTACAGGGAAGCTCGCAACTGG
GTGGCCAAGCGTTGCCCAATCTGTCGGAGCAGCCTGGACATGGATGGCCA
GGTGTCCAGGCAGTTCCACGATAACTGGCGTCTATTTGGTATTATGATGG
TACCGCTGATGGTGCTCAGTCTGGGCCCCTTTTATTTGCTGTTGCTTTAC
TGGGCAAGCTTTCTAGACCAT
FMO05016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17048-RB | 712 | CG17048-RB | 167..538 | 32..403 | 1860 | 100 | Plus |
| CG17048-RA | 592 | CG17048-RA | 167..538 | 32..403 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13354043..13354333 | 322..32 | 1455 | 100 | Minus |
| 2R | 25286936 | 2R | 13353812..13353892 | 403..323 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:36 has no hits.
FMO05016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:50 Download gff for
FMO05016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-RA | 185..566 | 24..411 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:15 Download gff for
FMO05016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-RA | 1..375 | 32..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:08 Download gff for
FMO05016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-RA | 163..544 | 24..411 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:08 Download gff for
FMO05016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13354043..13354337 | 24..322 | 98 | | Minus |
| 2R | 13353806..13353892 | 323..411 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:50 Download gff for
FMO05016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9241311..9241397 | 323..411 | 95 | <- | Minus |
| arm_2R | 9241548..9241842 | 24..322 | 98 | | Minus |
