FMO05017.5prime Sequence
386 bp (386 high quality bases) assembled on 2008-08-11
> FMO05017.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAAATATGTG
GCTAGAGTGGGCCCAGCGGTTTTCTCCAAGTTGGGAAAGTGGGCCTACAA
CATGTCTGGATTCAACCAATACGGCCTGTATCGCGATGACTGTCTGTACG
AGAATGAGGATGTGGCAGAAGCAGTGCGTCGTCTGCCCCGCAAACTGTAC
GATGAACGCAACTATCGCATTCTTCGAGCACTGCACCTTTCCATGACCAA
GACGATCCTGCCCAAGGAGCAGTGGACCAAGTACGAGGAGGACATCAAGT
ACTTGGAGCCCTATCTTAACGAAGTGCAAAAGGAGCGCGAAGAGCGTGAG
GAATGGAGCAAAACTCATGCAAGCTTTCTAGACCAT
FMO05017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17856-RA | 503 | CG17856-RA | 86..419 | 35..368 | 1670 | 100 | Plus |
| CG3560-RA | 523 | CG3560-RA | 122..443 | 35..356 | 650 | 80.1 | Plus |
| CG32576-RA | 1709 | CG32576-RA | 754..984 | 356..126 | 510 | 81.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28294133..28294466 | 35..368 | 1670 | 100 | Plus |
| X | 23542271 | X | 16286678..16286908 | 126..356 | 510 | 81.4 | Plus |
Blast to na_te.dros performed 2014-11-28 20:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord2 | 7650 | accord2 QBERT 7650bp | 4959..5027 | 338..268 | 106 | 66.7 | Minus |
FMO05017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:23 Download gff for
FMO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17856-RA | 86..419 | 35..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:49 Download gff for
FMO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17856-RA | 1..336 | 36..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:58 Download gff for
FMO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17856-RA | 86..419 | 35..368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:58 Download gff for
FMO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28294133..28294466 | 35..368 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:23 Download gff for
FMO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24119855..24120188 | 35..368 | 100 | | Plus |
