Clone FMO05035 Report

Search the DGRC for FMO05035

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:50
Well:35
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30441-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05035.5prime Sequence

446 bp (446 high quality bases) assembled on 2008-08-11

> FMO05035.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAGAACTTCAA
AAAGTTGGTGTGTTTATAGATGAAATTTACACGGTGCGAGTTGAGCATCC
AAACCTTTCCAGTAGCAAAATAATGTTTAAACAAGAATGCTTCAACTACA
TTAAAGCATTCACTATTTTTAAAAAGTTTGTGTTTAATTATTGTAATATT
TCTGAAACGTTTGCCAAAGATGTCGATAAGGAAAAACTACGCGCTATTGG
TACTCAAAATCAATTAAAAACGGCATTTATTCAGCGCCAGAACAAGCAGC
AAGTCTATCAATATGAGATATTTGAGCAAACAGTAGAACTTGAACGCTTA
AAAGGCGAATTGCAGTTTTTACAGCGAATTGAAACGGAGCAACATGAAAT
AATAAACAATTTTTTTGTCAATCAATATGCAAGCTTTCTAGACCAT

FMO05035.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-RB 406 CG30441-RB 7..399 36..428 1965 100 Plus
CG10395-RE 1438 CG10395-RE 1190..1438 428..180 1245 100 Minus
CG10395-RD 1175 CG10395-RD 927..1175 428..180 1245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5351724..5352116 428..36 1965 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:12:21 has no hits.

FMO05035.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:05 Download gff for FMO05035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 29..436 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:47 Download gff for FMO05035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 29..436 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:52 Download gff for FMO05035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 29..436 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:52 Download gff for FMO05035.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5351717..5352123 28..436 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:05 Download gff for FMO05035.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1239222..1239628 28..436 98   Minus