FMO05039.5prime Sequence
493 bp (493 high quality bases) assembled on 2008-08-11
> FMO05039.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTTAGCCGTTTCC
TAAAACCAAGCCTAGTTTTATGTAGGAGTGTGAGCAATACCGCATCCCTT
CGCTACAAGGATCCCATTTATCAGATTTTCCTGGACAAGGTGCGCGAGTA
TCGGCTGAAGAGTCCCAAGGGAAAGCCCGTAGATCCTGGTCCGGAATTCG
AGGCGGAGCTGAAGGAAGTCACTGAGCGCCTGGCTCTGCAATACGGCGGC
GGCGAGGGCGTGGATATGCTCGAGTTTCCGAAATTCAAGTTGCCCGATAT
TGATATTGATCCCATTTCGGTTGATGATCTACCAGAGAACCAACCAAAGC
CTGAGAAAAAGAATAGAGATAAAGAAGTAAAGGCCAAAGAAAAGGGTGGG
GAAAAAGAAGTGAAAGCCAAAGATGGCAAGAAAGCTGACGAACCAAAGGG
CAAGGATGAAAAGGACAAGATAAAGGCAAGCTTTCTAGACCAT
FMO05039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12027-RA | 635 | CG12027-RA | 39..479 | 35..475 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5011800..5012095 | 330..35 | 1480 | 100 | Minus |
| 3L | 28110227 | 3L | 5011600..5011744 | 475..331 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:51 has no hits.
FMO05039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:47 Download gff for
FMO05039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 39..479 | 35..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:30 Download gff for
FMO05039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 20..460 | 35..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:44 Download gff for
FMO05039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 39..479 | 35..475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:44 Download gff for
FMO05039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5011600..5011744 | 331..475 | 100 | <- | Minus |
| 3L | 5011800..5012095 | 35..330 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:47 Download gff for
FMO05039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5011600..5011744 | 331..475 | 100 | <- | Minus |
| arm_3L | 5011800..5012095 | 35..330 | 100 | | Minus |
