FMO05041.5prime Sequence
571 bp (571 high quality bases) assembled on 2008-08-11
> FMO05041.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAGTTAAGGTGT
TGGTTCTGATCTCCCTAGGATTATTACTATCGCTGGCTGAGGCTCAGCAG
GAGCATCCGGCGACATCTGTGAAGAAATGTTCCGGAAGTAAACCTTTTCC
GCTTGAGGTGCGTGTGCACAATTGCGTTACTCCACCCTGTCAGATTGTGA
AGGGAACGACACAGAAGTTCGAGATCGATTTCGCCGTGGACAAGTACATC
ACCCAGCTGACGACCTTGGTAAAGGCCACCACACTCGGAATCATTACGGT
GCCATATGAACTGCCTGCGGATGTGGCTGCCGTGTGCCCGAATCTCCAGT
ACGGCGCCTATTGCCCGCTGTATCCCACCGAGGATGTCTCCTATTTGTTC
ACCTTTCCCATTGGTGAATATCCCGAGATTGGCGTGAAGATCGAGATCTA
TCTGGTCGATCAGGACAATGAGATTGCCACGTGCTTCGTGTGCGATATTA
AGGTGGTCAAGGGCAACGGCGGCAATACGGTCTATGAGCTGGACTATCTC
AACGCAAGCTTTCTAGACCAT
FMO05041.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-RA | 661 | CG12813-RA | 3..523 | 33..553 | 2605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10055494..10055918 | 553..129 | 2125 | 100 | Minus |
| 3R | 32079331 | 3R | 10055984..10056081 | 130..33 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:44 has no hits.
FMO05041.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:19 Download gff for
FMO05041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 33..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:26 Download gff for
FMO05041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-RA | 3..530 | 33..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:01 Download gff for
FMO05041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 33..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:01 Download gff for
FMO05041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10055487..10055918 | 129..561 | 99 | <- | Minus |
| 3R | 10055986..10056085 | 28..128 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:19 Download gff for
FMO05041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5881209..5881640 | 129..561 | 99 | <- | Minus |
| arm_3R | 5881708..5881807 | 28..128 | 97 | | Minus |
