Clone FMO05042 Report

Search the DGRC for FMO05042

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:50
Well:42
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13476-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05042.5prime Sequence

503 bp (503 high quality bases) assembled on 2008-08-11

> FMO05042.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACATGAGG
GGAATGGCCAAGCGTTCTATTTGGCTCCAATGTCTTCGGGAAAATGCCAC
CAATATGCGCCTGGAGCACGAGGATCTGGGACGTCGCATTGCTGTTTCTT
TGGCCAGTTCCCAGAAAGCTCTAGTTGATATCGAAAACTTGAATCAAGAG
CTGTTAAAAATGAAGGACACAATCCATAATGCCATTTCCAATGTTATGGG
CTACGAAAAGAAGTGTTGTGAATTGCTCCTGGAAATTTTGATTAAAATAG
TTGAGAACAACGACCTGGATGCCGAACTAAATCCCAAAATGATCTCCAAG
GCGTTTCTCGACTTGGATCCGAGTTCCGACGAGACAGAAGTTCTGAATGA
CCGTAGTCTTGCAGCGTCTGATTTTAATCAGCAATATCCAAAAGATGTGC
CGGATTCTATTGATATAAACATAACAGAAGACCAGGCAAGCTTTCTAGAC
CAT

FMO05042.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-RB 694 CG13476-RB 81..527 39..485 2220 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14705544..14705990 39..485 2220 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 20:26:02 has no hits.

FMO05042.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:58 Download gff for FMO05042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 76..535 30..494 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:26 Download gff for FMO05042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 58..517 30..494 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:01 Download gff for FMO05042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 76..535 30..494 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:01 Download gff for FMO05042.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14705539..14705998 30..494 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:58 Download gff for FMO05042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14698639..14699098 30..494 98   Plus