FMO05043.5prime Sequence
582 bp (582 high quality bases) assembled on 2008-08-11
> FMO05043.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCTGATTTTCAAGA
ACAGCTGCGACAGTATCGCGCTCAGAAAAGGAGAAAGGAAACGGTAGACA
ACTTCAAGGACAAACTACGGAGATTCTGGATGTTGGGAACCGGGGCTAAT
AAAGATACCACAATAGAGGTACAACAGGTACCTACTAAGTTCGAAGCTAT
CTCGGAAAACTCACAAGATGAGGCTGTGACCTCCAGTGAAAGTGAATTGG
TGCCAGAGGAGCAGCCCACCAGATCCACAGATCATCACCACAAGGAAAAC
AACTGCCTAAAGTACACCCTCTGGACTGTCTATCTGCTGTTCTGGATAAC
TCTCTACGTTATTGCCATAAAGCTAAGCTTTGGATTGGTTTTCCTCATGT
TTTCCGCCCTCTTTGGCATCTACTTCAACACCCGAACGGAGCCAAAGAAA
CGGAACGAGATGAGTGCCTACAGCGTTTTCAACAAGAATTGCGAGAGTAT
AGACGGCACCTTGAAGGCCGAGCAGTTCGAAAGGGAAATCCGCTATGGAT
CCGGAAGTGTACGAGCAAGCTTTCTAGACCAT
FMO05043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-RA | 802 | CG13663-RA | 51..581 | 34..564 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25214546..25214934 | 564..176 | 1945 | 100 | Minus |
| 3R | 32079331 | 3R | 25214992..25215138 | 180..34 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:07 has no hits.
FMO05043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:01 Download gff for
FMO05043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 34..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:50 Download gff for
FMO05043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 34..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:04 Download gff for
FMO05043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 34..572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:04 Download gff for
FMO05043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25214539..25214932 | 178..572 | 98 | <- | Minus |
| 3R | 25214995..25215138 | 34..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:01 Download gff for
FMO05043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21040261..21040654 | 178..572 | 98 | <- | Minus |
| arm_3R | 21040717..21040860 | 34..177 | 100 | | Minus |
