FMO05046.5prime Sequence
563 bp (563 high quality bases) assembled on 2008-08-11
> FMO05046.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGGCATTTCGGTTCTTT
GGCAAGTCCTTGCTGTACGCTCTGCCACTTGGCGTCACTTTCCTGGACTG
CGTTGGTTATGTGGCCAGGGTGGATGGCATCTCCATGCAGCCCGCTCTCA
ATCCCGTGCCGGATGAAAAGGACTATGTGTTCCTGCTGCGCTGGGGCACC
CACAACAGTCAGGTGGAGCGCGGCGACATAATATCGCTCATTTCACCCAA
GGATCCCGCCCAGAAGATTATCAAGCGCGTGGTGGGGCTGCAGGGCGACG
TCGTGTCCACGCTGGGCTACAAGCACGAGATCGTTCGCGTACCCGAAGGA
CATTGTTGGGTGGAGGGCGATCACACAGGCCACTCCATGGACAGCAATAC
CTTTGGACCCGTCGCCCTGGGCCTGATGTCCGCGCGGGCAGTGGCCATCG
TGTGGCCACCGGAACGCTGGCGAATACTGGAGAACGAACTGCCGCGGCGA
CGGAGACCCATACAGGCCTCCAAGAACTCCAGCAACTACTACAACGCAAG
CTTTCTAGACCAT
FMO05046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11110-RA | 752 | CG11110-RA | 95..608 | 32..545 | 2570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20641995..20642414 | 126..545 | 2100 | 100 | Plus |
| 2R | 25286936 | 2R | 20641836..20641931 | 32..127 | 480 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1860..1910 | 511..559 | 105 | 72.5 | Plus |
FMO05046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:58 Download gff for
FMO05046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11110-RA | 87..608 | 19..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:26 Download gff for
FMO05046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11110-RA | 27..551 | 19..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:48 Download gff for
FMO05046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11110-RA | 87..608 | 19..545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:48 Download gff for
FMO05046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20641827..20641930 | 25..126 | 96 | -> | Plus |
| 2R | 20641996..20642414 | 127..545 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:58 Download gff for
FMO05046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16529332..16529435 | 25..126 | 96 | -> | Plus |
| arm_2R | 16529501..16529919 | 127..545 | 100 | | Plus |
