FMO05047.5prime Sequence
676 bp (676 high quality bases) assembled on 2008-08-11
> FMO05047.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGATGTC
TGTGTTTGAGGAAGTTCTCCTCGTATCCCTCAGTTCCACAAGAGATTATG
AACACCCTCAGGATGAATACAGCACTAAGTCGTAGTCAGATCAAGTATCT
GTATATTCGATTCCACCAGTTTTCAGGAGGAGGCAAAGATCCCCCAAGTC
ATCTGCACAAGTACAATTTCTATTCAGGACTACTGCAACTAAACCCCTTG
CTGCCCACCATATTGAACTCCATGTTCGGGAATAAAGTGACAATTACCTT
TGTGGATTTCGCTCTGTTTCTGAGCACCTTTCAGGCCCATTCTCTTAAAA
CCTCCAATGAGCTAAAAAATGTGATGATGGACAAGAAATTAAGGTTAATT
TTCAACATGTACGATAACAACAAGGACGGTCGTATTACAAAGTATGACTT
GGTTGTAGTTGTCCACAAGCTGTTCTCAAATCTATTGGATCACGTGCAGA
TAATGCGCATTGTGAATACCATAATGAAGGAAATGGATCATACGGACTCG
AACCAAATAATGTTCCAAGACTTCTGCAAAGCATTCGCAGTCTTCGACAT
GACCGAAATGATGGTCACCTGGATACCCGAATACCATGGTCGAACCACAG
ATGATTTGGCAAGCTTTCTAGACCAT
FMO05047.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14362-RA | 688 | CG14362-RA | 6..623 | 41..658 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13855039..13855308 | 395..126 | 1350 | 100 | Minus |
| 3R | 32079331 | 3R | 13854664..13854926 | 658..396 | 1315 | 100 | Minus |
| 3R | 32079331 | 3R | 13855365..13855449 | 125..41 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:36:28 has no hits.
FMO05047.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:42 Download gff for
FMO05047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14362-RA | 1..626 | 39..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:15 Download gff for
FMO05047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14362-RA | 1..621 | 41..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:44 Download gff for
FMO05047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14362-RA | 1..626 | 39..662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:44 Download gff for
FMO05047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13854661..13854926 | 396..662 | 99 | <- | Minus |
| 3R | 13855039..13855308 | 126..395 | 100 | <- | Minus |
| 3R | 13855365..13855453 | 33..125 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:42 Download gff for
FMO05047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9680383..9680648 | 396..662 | 99 | <- | Minus |
| arm_3R | 9680761..9681030 | 126..395 | 100 | <- | Minus |
| arm_3R | 9681087..9681175 | 33..125 | 95 | | Minus |
