FMO05048.5prime Sequence
350 bp (350 high quality bases) assembled on 2008-08-11
> FMO05048.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGGTTTCC
CCTGGAGAGGGGGAAGTCAATGGCGGCGGAGATGTGGCCAAGAACGACTC
CAACTCGCAGCAATCGGTGGATGGAATCGATGCGTTCGCCGCCTGCCAGA
AGCCGCGTCCGGACACCAGTTCCATGCCGGTTCGCCAGTACCTCGACCAG
ACGGTGGCCCCCATTTTGCTGCACGGACTGCAGGCTTTGGCCCGGGATCG
CCCCAGTGATCCGATCAGCTACCTGGCCACCTATCTGCTGAAGAACAAGA
ACCGCTGCGATGAGGTCAAGACAGAAGAAAACGCAAGCTTTCTAGACCAT
FMO05048.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpy-30L2-RB | 506 | CG11591-RB | 45..338 | 39..332 | 1470 | 100 | Plus |
| Dpy-30L2-RA | 550 | CG11591-RA | 89..382 | 39..332 | 1470 | 100 | Plus |
| Dpy-30L1-RA | 655 | CG6444-RA | 403..510 | 186..293 | 195 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4047156..4047449 | 332..39 | 1470 | 100 | Minus |
| 2L | 23513712 | 2L | 10733055..10733162 | 186..293 | 180 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:57 has no hits.
FMO05048.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:16 Download gff for
FMO05048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpy-30L2-RA | 84..387 | 31..340 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:29 Download gff for
FMO05048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11591-RA | 84..387 | 31..340 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:43 Download gff for
FMO05048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpy-30L2-RA | 84..387 | 31..340 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:43 Download gff for
FMO05048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4047151..4047460 | 30..340 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:16 Download gff for
FMO05048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4047151..4047460 | 30..340 | 97 | | Minus |
