FMO05052.5prime Sequence
541 bp (541 high quality bases) assembled on 2008-08-11
> FMO05052.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGCGCCAACTAC
GGTTGACAATGGATATTTCGGGTTGGATCTTCCTCCCGTGGAGACGCTCC
ATGTCCAACATGAAGGACTCTCCTCCACCGCCACCACCACTGGCCAGCAC
TTTCAACGACGTGATTGTGGACTACGAGGACCCGGATTATCTTCCACTGC
CGGAGTATCCGGTGCGTCCAAACGAGCCGTTGGAAACTCGCAAGCAACGG
CTTTTGTACCAATCGCGCAAGCGCGGAATGCTGGAGAACGATCTTCTGCT
GAGCACCTTTGCGGCCAAGCATCTCCAGAACTTCAGCGCCGAGCAGACGG
CGCAGTACGACCAGTTGATCAACGGGGTCAGCAACGACTGGGATATCTAT
TACTGGGCCACCGAGGTGAAGCCCACGCCCAAGGAGTACGACACGGAGAT
CATGGGGCTGTTGAAGGAGCACGTCAAGAACGCCGAACGGGTCACGCGAC
TCCGCCAGCCGGATCTGAATATTGCAAGCTTTCTAGACCAT
FMO05052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14757-RA | 739 | CG14757-RA | 117..605 | 35..523 | 2445 | 100 | Plus |
| CG12895-RB | 667 | CG12895-RB | 160..410 | 164..414 | 565 | 82.1 | Plus |
| CG12895-RA | 593 | CG12895-RA | 160..410 | 164..414 | 565 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8172498..8172772 | 523..249 | 1375 | 100 | Minus |
| 2R | 25286936 | 2R | 8173172..8173370 | 250..52 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 10436855..10436997 | 414..272 | 415 | 86 | Minus |
Blast to na_te.dros performed 2014-11-28 20:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2226..2298 | 131..59 | 112 | 64.9 | Minus |
FMO05052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:36 Download gff for
FMO05052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14757-RA | 113..610 | 27..529 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:30 Download gff for
FMO05052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14757-RA | 113..610 | 27..529 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:50 Download gff for
FMO05052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14757-RA | 113..610 | 27..529 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:50 Download gff for
FMO05052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8172493..8172771 | 250..529 | 98 | <- | Minus |
| 2R | 8173173..8173369 | 53..249 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:36 Download gff for
FMO05052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4059998..4060276 | 250..529 | 98 | <- | Minus |
| arm_2R | 4060678..4060874 | 53..249 | 100 | <- | Minus |
