Clone FMO05053 Report

Search the DGRC for FMO05053

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:50
Well:53
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05053.3prime Sequence

459 bp (-459 high quality bases) assembled on 2008-08-11

> FMO05053.3prime
ATGGTCTAGAAAGCTTGCGGGCTCCATTCCACCAGATTCGGCATCGATCT
TGTGATCGGTATAGATGGGTTGCAATATCTCACGGGCAGCTTCGTGATCA
GCTTTTCCCAGGGCCTGTGATCTTCCATACAGCTTGATGTACTTCTTTTC
CTTGTCGTGAACCAAGTAACCACCTCCAAGACCCTGGGTGCACAAGCCCA
TCGACTCAGCCTCCTTTTTCAACTCATCGTATACATCAAGATGGTACTTG
GCCTTGGAAAGGCTACGAATCACCTGCTTGGCGCTACCCATTTCCCCATG
GATATAAACGTGGGCCATCATGTACTTTGATTTTCCACTTTCCACCTTGG
CAACAGGAAAAGCGACTAGACTTCGCATTGGCTTCTCACAATAAAGTCGA
GCCGCTTGCATCATTGGCCGCCAAACGGGTTTAAGAAATTTTCCAGCAAA
CTCCATGTC

FMO05053.3prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-RA 646 CG18662-RA 71..511 459..19 2205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8981077..8981297 239..19 1105 100 Minus
2L 23513712 2L 8980853..8981023 406..236 840 99.4 Minus
2L 23513712 2L 8980729..8980783 459..405 275 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:07:50 has no hits.

FMO05053.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:31 Download gff for FMO05053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 71..511 19..459 100   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:17 Download gff for FMO05053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 50..490 19..459 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:03 Download gff for FMO05053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 71..511 19..459 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:03 Download gff for FMO05053.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8981077..8981297 19..239 100   Minus
2L 8980855..8981019 240..404 100 -> Minus
2L 8980729..8980783 405..459 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:31 Download gff for FMO05053.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8980729..8980783 405..459 100 -> Minus
arm_2L 8980855..8981019 240..404 100 -> Minus
arm_2L 8981077..8981297 19..239 100   Minus