FMO05057.5prime Sequence
853 bp (853 high quality bases) assembled on 2008-08-11
> FMO05057.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGATGTG
GTATCTGTACCTCTTTTTGTTACCGCTAACTGCGAGCTTGATACCAGAAG
ATGATCCCCATTGTAAGCCCAATCTCTGCATGAACTCGGAAATTCATGCA
GTAGGTGAGCAATGCGGGAAAAACAATCTGTTCCTGAACGTTAATGGAGC
CTTGAAGACTGGCATCCTCAGCAGGATCAACATGTTGCGCAACTATGTGG
CCAGTGGAGTGGGCAACTATTCGGTAGCCGCTCGCATGCCGACGATGGGC
TGGGATTTTGAACTGCAGAGGCTGGCGGATAGACAGGTTCGCCAATGCGA
TGAGACGGGAAAGTTTTGCGCCAATACCGACAAGTATCACTATGTGGCAA
CCACCGAAATCCGTAGCAAGATGGGACGGACCAAGAGCCTTAAAAGTGCG
ATTTTAGATAAATTGCTGCCGGAGTTGTTTCTGGATGTCATGGGATGCAT
GATGAACAGTCAGAAATTAGTGCCAGTAAGAGAAGGAACCTGTGTGGGCC
ACTATATGCCCCTGATTCAGGACCATGGTTCTCGTATGGGATGCGGCCTT
CGTGTGAAAGGTAGGGACGAGAAGGAGTCAAATATTATCCTGCTCTGCCA
CTTTTCGCGGGCCAGTGTGAACAACCTGGTTCCGTACGAAGAGGGCCAGA
TTCCTGCCGGGAAGTGCGCCACTGGACCGAGCCAGATGTACCAGTTCCTC
TGCAGCGAGGATGAGTACGTCGATGCCAACAGCATGGTGGTGGAATCGAA
TATGCCGTCCAGCGACCAAATACAAGTGGACATTGCAAGCTTTCTAGACC
ATT
FMO05057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| antr-RA | 896 | CG30488-RA | 4..802 | 36..834 | 3980 | 99.9 | Plus |
| antr-RB | 917 | CG30488-RB | 4..823 | 36..834 | 3760 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12847428..12847816 | 536..148 | 1945 | 100 | Minus |
| 2R | 25286936 | 2R | 12846942..12847240 | 834..536 | 1495 | 100 | Minus |
| 2R | 25286936 | 2R | 12847889..12848001 | 148..36 | 550 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:07 has no hits.
FMO05057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:19 Download gff for
FMO05057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30488-RA | 4..802 | 36..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:18 Download gff for
FMO05057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30488-RA | 12..816 | 28..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:22 Download gff for
FMO05057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| antr-RA | 4..802 | 36..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:22 Download gff for
FMO05057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12846942..12847239 | 537..834 | 100 | <- | Minus |
| 2R | 12847428..12847816 | 148..536 | 100 | <- | Minus |
| 2R | 12847890..12848007 | 28..147 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:19 Download gff for
FMO05057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8734447..8734744 | 537..834 | 100 | <- | Minus |
| arm_2R | 8734933..8735321 | 148..536 | 100 | <- | Minus |
| arm_2R | 8735395..8735512 | 28..147 | 95 | | Minus |
