FMO05059.5prime Sequence
574 bp (382 high quality bases) assembled on 2008-08-11
> FMO05059.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGTCAGACTACGATCA
TGCACGCATTAAGAAATTGGTTCTAAAAGGCGAGAAACTCAAAAAGAGCA
AAAAACGCAAGAAGGAAAAGGATGAGGCTGGATCTTCCAAAAAGGCCAAG
GTAGTAGTGGATGAGGATGCCGTGAAGCACGGCGGTTGGTGGGCAGCAAA
GACAGCGGCCGACATCACCGGTACAGTGTCCATAGAGTTTGGCGATAGGA
GTTACCTAAAGGCCATGGACAATGGTCTCTTCACATTGGGAGCACCACAC
AACGCTGGGCGATGGCCCAGATCCCGAGGAGATTTTCACGGCTTTTTCCC
ATCAACGACCGAAAGGTAGCGTTTAAGTCTTGGCTTATGGCAAGTACTTG
AAAAATTGAAAAAGGATGGAATGGTCACGGGGCGCTCCAAACCATGGGGC
GGCTGGAACAATGGGAACCGGTTTTTAAGAAACACCAATGGTTCTTCATC
CGAACCGGACCTTTAATGTCAACCATCCCAAAATACCCCGCTGTCTTTGA
AAAAGGGTTCACTAAACTCGTAAG
FMO05059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FRG1-RA | 903 | CG6480-RA | 72..552 | 34..515 | 1980 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20296607..20296789 | 275..93 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 20296347..20296543 | 476..275 | 555 | 90.6 | Minus |
| 3L | 28110227 | 3L | 20296842..20296900 | 92..34 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:30:35 has no hits.
FMO05059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:46 Download gff for
FMO05059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6480-RA | 62..490 | 22..457 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:20 Download gff for
FMO05059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6480-RA | 1..419 | 34..457 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:37 Download gff for
FMO05059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FRG1-RA | 62..490 | 22..457 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:37 Download gff for
FMO05059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20296363..20296542 | 276..461 | 92 | <- | Minus |
| 3L | 20296607..20296789 | 93..275 | 100 | <- | Minus |
| 3L | 20296842..20296909 | 22..92 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:46 Download gff for
FMO05059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20289463..20289642 | 276..461 | 92 | <- | Minus |
| arm_3L | 20289707..20289889 | 93..275 | 100 | <- | Minus |
| arm_3L | 20289942..20290009 | 22..92 | 93 | | Minus |
