FMO05064.5prime Sequence
929 bp (929 high quality bases) assembled on 2008-08-11
> FMO05064.5prime
ATACATTATACGAAGTTATCAGTCGACATGCTGTTGGGCTGCGTGCAGTT
TCAGTGCGCCCAGGAGACAAAACACGAAGGAATTATATTGTATCTGGAGG
GAATCGTTAATCTGCAACTTAGTGCTAAGACCGTTGGGCTTTTCGATGCT
TTCTATAACTCGGTGAAACCTATTAATCTGCTGCAGAATAGCCTGGAGTT
ATCTGCGCCCGGAAAACTGAGCGCCGGCCGTTCGGAGTTCCATTTCGAAC
TGCCTTTGGTGTGCAAAAAGGAACCGCGAATTCTATATGAAACATACCAC
GGAGTATTCATTAACGTGAATTACCAACTCACTTGCACTGTAAAAAGGAA
TTTTCTTGGCAAAGCCACGACCAAAATCCAGCAGTTCTGCGTGCAATACA
AACCGGTGCCTCTAAGCGAGGATTCAAAGAAAGTGGTTCCTTTTAGTTTG
AGTCCGGACTCACTGCAGAAGAATGCCAGCGCCAAGGAGAGACTTTCCAT
GCCGAGATTCCTTATAACTGGGCGCCTGGACCGGAGTGAATTCTGCGTAA
CAACTCCGATTACTGGCAGCATTACGGTGCAACACACGGAGGCGGCCATT
AAGTCCATTGAGATGCAATTGGTTCGTGTGGAAACCTGCGGTTGCGACGA
GGGGTACTCCAAGGATGCCACCGAAATCCAGACCATTCAAATAGCCGACG
GCAATGTACTGCCGAAGCTAGAACTACCCATCCATATGGTCCTGCCCAGA
TTGTTCACCTGCCCTACGTTTGCTCACGAAGAACTTCAAAATCGAGTTTG
AACTTAATCTGATTGTTGTATTTAAAGAAGACTACACGGTAGTGAAAACT
TCAAAATAGTTCCTAAACGTTCGACAGGTCCTCTTCCCAGCAAAGTAACA
ACTGCAGACGCGCAAGCTTTCTAGACCAT
FMO05064.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4074-RB | 1157 | CG4074-RB | 67..949 | 25..907 | 4310 | 99.3 | Plus |
| CG4074-RA | 1022 | CG4074-RA | 67..949 | 25..907 | 4310 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20768593..20769361 | 794..25 | 3800 | 99.9 | Minus |
| 3L | 28110227 | 3L | 20768415..20768529 | 907..794 | 465 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:57 has no hits.
FMO05064.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:36 Download gff for
FMO05064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4074-RA | 67..957 | 25..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:20 Download gff for
FMO05064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4074-RA | 1..888 | 28..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:07 Download gff for
FMO05064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4074-RA | 67..957 | 25..915 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:07 Download gff for
FMO05064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20768406..20768528 | 795..915 | 93 | <- | Minus |
| 3L | 20768593..20769358 | 26..794 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:36 Download gff for
FMO05064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20761506..20761628 | 795..915 | 93 | <- | Minus |
| arm_3L | 20761693..20762458 | 26..794 | 99 | -> | Minus |
