FMO05065.5prime Sequence
914 bp (914 high quality bases) assembled on 2008-08-11
> FMO05065.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCTGCAGCAGA
TTCGAGTACGTTAAATCCTTTGAGCAGGACGACAGCATACTGCCTAATGT
GTGGATAGTCATACGAATAGACGGCAAAAAGTTCCACAAGTTCTCCAAGA
CGCACGATTTTGAAAAGCCCAACGATGAAAATGCTCTCAATGTGATGAAT
GCTGCTGCCACGGCGGTGATGCAGGAGTTTCGGGATATTGTCCTCGCCTA
CGGTCAAAGTGATGAGTACTCCTTTGTTTTTCGCAAAGAGACGGCAGCGT
TCAAGCGACGATCCGCCAAACTGCTCACCTACGTCACCAGCTTGTTCTCC
TCGAGCTATGTAATGCAATGGTCCAAGTGGATGAATCTGCCATTGGCCTA
TGCTCCGTGTTTCGATGGTCGCGTTGTTCTGTATCCTTCGGAGCAGAATC
TAAAGGACTATCTCAGCTGGCGACAGGCCGATGTGCATGTGAACAACCTG
TACAATACCGCCTTTTGGAAACTCGTTTTGGAAAAAGGCCTGACGAACCA
GCAAGCCGAGGCGAAACTCCGTGGCACCTTTTCGGCGGACAAAAATGAGC
TGCTCTTCCAGGAATTCGGGATAAATTACAACAATCTGCCGGCAATGTAC
AGAAAGGGAACGATTCTGCTGAGAAAACGCGTGATATTGGGTGAGAAGAG
CAGGCAGGCCGTGGTGCCGCTGCACGAGGATCTGATATCTTCGCAGTTCT
GGAAGGAACACACCGAAATATTGGGAAAATATGTGCCAGGCACATACGAC
GCACCACAAACTTTTCCCCGATTGGTGGAGATGCAAATAAATGGCAAGGA
TGACAATGAGGCGGAGGAGCCACAAAATCTGGCTGGTACCAGCGCAAGCT
TTCTAGACCATTCG
FMO05065.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Bc-RB | 1076 | CG4103-RB | 22..880 | 35..893 | 4295 | 100 | Plus |
| l(2)35Bc-RA | 1149 | CG4103-RA | 95..953 | 35..893 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15008685..15009395 | 893..183 | 3555 | 100 | Minus |
| 2L | 23513712 | 2L | 15009450..15009598 | 183..35 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:59 has no hits.
FMO05065.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:56 Download gff for
FMO05065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bc-RA | 95..953 | 35..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:21 Download gff for
FMO05065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4103-RA | 1..861 | 36..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:42 Download gff for
FMO05065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bc-RA | 95..953 | 35..893 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:42 Download gff for
FMO05065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15008685..15009394 | 184..893 | 100 | <- | Minus |
| 2L | 15009450..15009598 | 35..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:56 Download gff for
FMO05065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15008685..15009394 | 184..893 | 100 | <- | Minus |
| arm_2L | 15009450..15009598 | 35..183 | 100 | | Minus |
