FMO05066.5prime Sequence
818 bp (818 high quality bases) assembled on 2008-08-11
> FMO05066.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCATTTCCTGGCC
TACGTGATTATAACAATTCAGCTGTTCGGTGGACTGCAGTGCCAGAAGTT
GCCTGCCAAGGTGAAAAAATGCCACTTCGGTGACGGAAAGTGCCTGGTAG
AGTCGGCAAATGCACTGCTGAGAGATTTTCCAAAGGGCATTCCCGAGGTC
GATCTGAAACCCTTCAATGTGCTGTCCGTGCGGGATTGGCTGCTGGTCAA
CGATTCCCAGGTGGGAGGTGCCTGGTACTACTTCAATCTGATCAATCAGA
TCAACTATGGCTTCGAGAACACCACGATCACGGAGATCAGGGGATTCGAC
AAGGATCCCACCACCACCAAGATCGAAATTCACGGCAAGATTCCCCGGCT
GGTTTACAAGGGCGACTATGTGGCCAAGGGACGGATGCTCTGGTTCGTCG
ATATCCACTCTCAGGGAACGTCGGAGTCGGATTTCCTCAATTTTCAATTC
GTTCTTACGCTGAAAGTGCGCGTCGAGTACAGAAACAACAAGAGATATTT
AAAGATCTACGAGCTAGTTCCTAATATAAGGCTGGACCGCTGGATTATGT
GGCTAGACAACTTCTTTCCCGACAATGAAGACCTAACGATTGCAGTTAAC
AATCTGTTCAACCGGAATTGGGTGGAGTTCTGGAACGAACTGGAGCCGGG
TATTCTGCGTTTGTTCGAAACCGTCTTTTTAAGTCTATTTGAGGATTTAT
TCGAAAAAGTACCCTATGATGATCTGTTCCTAGCCGCTGAAGACCCAAAG
GCAAGCTTTCTAGACCAT
FMO05066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7079-RB | 1237 | CG7079-RB | 104..868 | 36..800 | 3825 | 100 | Plus |
| CG7079-RA | 934 | CG7079-RA | 104..868 | 36..800 | 3825 | 100 | Plus |
| CG31207-RA | 835 | CG31207-RA | 289..395 | 280..386 | 205 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21048112..21048598 | 589..103 | 2435 | 100 | Minus |
| 3R | 32079331 | 3R | 21047831..21048042 | 800..589 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 21048660..21048726 | 102..36 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 21046536..21046642 | 386..280 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:58 has no hits.
FMO05066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:38 Download gff for
FMO05066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 85..867 | 24..808 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:54 Download gff for
FMO05066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 1..768 | 36..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:51 Download gff for
FMO05066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 93..875 | 24..808 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:51 Download gff for
FMO05066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21047824..21048041 | 590..808 | 98 | <- | Minus |
| 3R | 21048112..21048598 | 103..589 | 100 | <- | Minus |
| 3R | 21048660..21048737 | 24..102 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:38 Download gff for
FMO05066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16873546..16873763 | 590..808 | 98 | <- | Minus |
| arm_3R | 16873834..16874320 | 103..589 | 100 | <- | Minus |
| arm_3R | 16874382..16874459 | 24..102 | 93 | | Minus |
