FMO05068.5prime Sequence
844 bp (844 high quality bases) assembled on 2008-08-11
> FMO05068.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGGATATTTTAC
AAGAACCAGTACATCAGTATGGAAATCGGAGCCACCAGGCGGAGTGTATT
CCGCTGGGAAGATATACAGCTTACGGATCGGAAATCGGACAGGATGATCC
AGACAAGGGCTTGGGATTCTGCAGCGCCAGCATCCGGCGAGGATTCATCC
GGAAGGTGTACCTCATCCTGTTGGCCCAACTGATCACTTCCCTGGTGGTT
ATAGTTTCACTTACTGCTGATAAACGGGTGCGTCTGATGGTGGCAGAAAG
CACCTGGATATTTGTGGTGGCCATACTAATAGTGGTCTTCTCTCTGGTGG
CTCTGGGCTGCAATGAGGATCTGCGTCGTCAGACCCCAGCTAACTTCATC
TTCCTATCTGCCTTCACGATAGCCGAGTCCTTTCTGCTGGGCGTGGCAGC
CTGTCGTTATGCCCCAATGGAGATTTTCATGGCCGTGCTAATCACGGCGT
CAGTTTGCCTTGGACTCACCCTTTTTGCTCTGCAGACGCGTTACGACTTT
ACCGTCATGGGTGGCCTCCTGGTGAGCTGCCTGATAATACTGCTCTTCTT
TGGAATTGTGACCATCTTCGTGGGCGGACATATGGTCACCACCATATATG
CCTCATTGAGCGCTCTGCTCTTCTCCGTTTATTTAGTTTACGATACACAA
TTGATGATGGGAGGCAAGCATAGGTACTCCATTAGTCCCGAGGAGTACAT
ATTCGCTGCCCTAAATATTTACATGGATGTAATGAACATATTCCTGGACA
TTTTGCAATTAATCGGAGGATCCGATGCAAGCTTTCTAGACCAT
FMO05068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9722-RA | 945 | CG9722-RA | 71..862 | 35..826 | 3960 | 100 | Plus |
| CG3814-RD | 933 | CG3814-RD | 639..793 | 647..801 | 295 | 79.4 | Plus |
| CG3814-RC | 1011 | CG3814-RC | 717..871 | 647..801 | 295 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14152968..14153759 | 826..35 | 3960 | 100 | Minus |
| 2R | 25286936 | 2R | 12875304..12875458 | 801..647 | 295 | 79.4 | Minus |
| 2R | 25286936 | 2R | 12877685..12877822 | 802..665 | 240 | 78.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:06 has no hits.
FMO05068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:55 Download gff for
FMO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9722-RA | 71..867 | 35..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:34 Download gff for
FMO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9722-RA | 71..865 | 35..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:45 Download gff for
FMO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9722-RA | 71..867 | 35..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:45 Download gff for
FMO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14152963..14153759 | 35..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:55 Download gff for
FMO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9978685..9979481 | 35..834 | 99 | | Minus |
