FMO05069.5prime Sequence
635 bp (635 high quality bases) assembled on 2008-08-11
> FMO05069.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGGACATACCG
GCAACCAGCGAAGGTAGTGCGAACACTAGTGAGGCAGTAGTGGAGTATCA
GCAGCCAACTCCGGAGTTTTTACAACGCAAAATCTATTTTTTGGTGGACC
AATTGCGAACTTACCATTCGGAACTTCCCGAAAACTTGCAGACACGCATT
TCCTACGATCTACTCACCGAACTCGCCAATTGTGTGCTAAACGATGGCAT
TTTTGTAATAGTAAAAGCATTAATGGAGCTGCAACACGAAACCGAAAGAC
ACTTGATTAAAATACGGATGCAGGCGGAGAACGAGTATGAAATAGAAGTG
GCCGAGTGGAGGAGCAAGATCAAGGATCCCGAGGAGTTGCGCCACATTTT
GGGACTCATGAAAATAAAGCACACTAAGAAACTACACGAGTCGGATACGA
AGATTATCGAAATACTAGATCAAAAGGTTAATGACCAACAATCCACACTT
CAAAAGGCCGGCGTTCCCGGCTTCTATGTCACCGAGAATCCAAAGGAGAT
AAAAATACAAATGTTCCTGTTGGACTTCATTTTGCGTTTGAGCCGGCTAA
AATACGAGCCCGGCAAAGCAAGCTTTCTAGACCAT
FMO05069.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gdl-ORF39-RA | 965 | CG33755-RA | 292..873 | 36..617 | 2880 | 99.7 | Plus |
| gdl-RB | 1175 | CG33756-RB | 292..873 | 36..617 | 2880 | 99.7 | Plus |
| gdl-RC | 1022 | CG33756-RC | 139..720 | 36..617 | 2880 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15509937..15510233 | 182..478 | 1470 | 99.7 | Plus |
| 3L | 28110227 | 3L | 15509736..15509881 | 36..181 | 730 | 100 | Plus |
| 3L | 28110227 | 3L | 15510603..15510745 | 475..617 | 700 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:40:30 has no hits.
FMO05069.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:10 Download gff for
FMO05069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gdl-ORF39-RA | 282..876 | 24..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:55 Download gff for
FMO05069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gdl-ORF39-RA | 282..876 | 24..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:10 Download gff for
FMO05069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gdl-RC | 129..723 | 24..621 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:10 Download gff for
FMO05069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15509736..15509881 | 36..181 | 100 | -> | Plus |
| 3L | 15509937..15510231 | 182..476 | 99 | -> | Plus |
| 3L | 15510605..15510748 | 477..621 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:10 Download gff for
FMO05069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15503705..15503848 | 477..621 | 97 | | Plus |
| arm_3L | 15502836..15502981 | 36..181 | 100 | -> | Plus |
| arm_3L | 15503037..15503331 | 182..476 | 99 | -> | Plus |
