FMO05070.5prime Sequence
884 bp (884 high quality bases) assembled on 2008-08-11
> FMO05070.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTACGGAAT
TGGTAGTGGCCCTTATGCTCTTTGGATTCCTGCAGGTTGCATTCAGCCAG
GACAATGCGACTGCTCCCCCAACGGACTATTGTCAGAGTGGATTGTGCCC
CTCTCTAAAAAAACACATTGCCTGCAAGAACAAAGGAGAGTTGGGCAAAC
AGTGTTCTCCCGACGCCCATTTGGTCAATCTCACTGGCCTGCAGGACCTG
ATCCTGGGTGAACACAATGCATTGCGAAATGTCCTTGCTTCGGGAAAAAT
CATCAATTTACCTAAGCCCGATCGCATGGCCACACTGCAGTGGCATTCAG
AACTGGCCGATCTGGCCACACTGAATGTGAAGCAGTGTGTTCTGCAGCAC
GATTCTTGTCACAACACTCCAGATTTCCATAACTCTGGTCAGAACTTGGC
TTTGGTCAACATAACCCTGCTACCTGAAGACGGAAATCACACCGACGAGT
GCCTTGTTAAGGAGTCTATTGGAGGCTGGTGGAATCAGAGTATCAATATC
ACAAAAGAGCAATTGCAGCGTTTTCCCAAAGGAAAATTGGGAGATTCCAT
TCGCAATTTTGCCGTCATGGCCCGTGACAACAACACCCATGTGGGATGTG
CCGCCTTGAGATTCGAGAAGCCCGCAGGACATCCGCTATTCCTTTTGGCC
TGCAACTATGCCAGCAATTATGTTCCCGACTGGCCCATCTACAAGGAGAA
AGCCATTGGCTGTCAGTCCGGTTCCGACCTCAAATATCCATCGCTTTGCA
AGGCTGGTGAGGAATACCAGGATCTTATCGGGCAGCAGGGCTCCAAGGGG
AAGAGATTTGGACGCTGCAAGCTTTCTAGACCAT
FMO05070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6628-RA | 1096 | CG6628-RA | 3..834 | 37..867 | 4135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10166403..10166809 | 594..188 | 2035 | 100 | Minus |
| 3L | 28110227 | 3L | 10166080..10166344 | 859..595 | 1325 | 100 | Minus |
| 3L | 28110227 | 3L | 10166870..10167021 | 188..37 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:25 has no hits.
FMO05070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:08 Download gff for
FMO05070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6628-RA | 1..834 | 36..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:53 Download gff for
FMO05070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6628-RA | 1..839 | 35..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:53 Download gff for
FMO05070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6628-RA | 1..834 | 36..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:53 Download gff for
FMO05070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10166071..10166344 | 595..867 | 99 | <- | Minus |
| 3L | 10166403..10166809 | 188..594 | 100 | <- | Minus |
| 3L | 10166871..10167030 | 27..187 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:08 Download gff for
FMO05070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10159171..10159444 | 595..867 | 99 | <- | Minus |
| arm_3L | 10159503..10159909 | 188..594 | 100 | <- | Minus |
| arm_3L | 10159971..10160130 | 27..187 | 98 | | Minus |
