FMO05071.5prime Sequence
850 bp (850 high quality bases) assembled on 2008-08-11
> FMO05071.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGGGTGA
TCTAGTGGACTTTTTGGGCAAATCCCCACCCGATCCTGTGCGCCTGCCAC
TCCTGGCCAGCCACAAGCCCGTCCTGATGGTATTGGCCACCTACCTGTTC
TTCGTAAAGATAGCGGGTCCAAAGATCATGCGGAATCGAAAGCCCTTTGA
CCTTCGCGGTCTGATAAAGGCGTACAACATCATGCAGATCGTGTACAATG
TCATCATGTGCTTTTTTGCTGTCCACTTCATGCTGGGACCCGGAGACTAT
AACTTTAAGTGCATCAAGAACCTGCCGCCGGATCATGAGTACAAGACCTG
GGAGCGCTGGCTTACGTACTCGTACTTCTTCAATAAGCTGCTCGATCTGC
TGGAGACGGTCTTCTTTGTGCTGCGAAAGAAGGATCGCCAGATATCCTTT
CTGCACGTCTTCCATCACATGTACATGCTGTACTTCAGCTTTATGTATCT
GTACTACTACGGATACGGTGGTCATGGGTTCTTTATGTGCTTCTTCAACG
TCGTCGTGCACATCATGATGTACAGCTACTACTATCAGTCGTCGCTCAAT
CGCGATTCGAAGGGCGATCTGTGGTGGAAGAAGTACATCACTATCGTTCA
GCTCATCCAGTTTGGAATCGTTCTGGGGCATAGTATCTACACCCTAAAGC
AACCGGACTGTCCATCAGCCCGGTTCTCGGCGACCTGTGCCGGCAGCATC
TCCGTTGTGTTCATCATCTTATTTAGCAACTTCTATTTTCATGCCTATAT
TCGACCCAAGAAAAGGAAAACAGAAAAACATCGCAAGCTTTCTAGACCAT
FMO05071.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9458-RA | 900 | CG9458-RA | 11..802 | 40..832 | 3940 | 99.9 | Plus |
| CG9459-RA | 901 | CG9459-RA | 213..654 | 223..664 | 845 | 79.4 | Plus |
| CG8534-RA | 990 | CG8534-RA | 326..484 | 310..468 | 390 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9819012..9819575 | 832..268 | 2775 | 99.8 | Minus |
| 3R | 32079331 | 3R | 9819639..9819867 | 268..40 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 9817675..9818069 | 664..270 | 790 | 80 | Minus |
| 3R | 32079331 | 3R | 9813275..9813433 | 310..468 | 390 | 83 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:22 has no hits.
FMO05071.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:55 Download gff for
FMO05071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9458-RA | 3..808 | 32..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:33 Download gff for
FMO05071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9458-RA | 3..808 | 32..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:00 Download gff for
FMO05071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9458-RA | 3..808 | 32..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:00 Download gff for
FMO05071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9819006..9819575 | 268..839 | 99 | <- | Minus |
| 3R | 9819640..9819875 | 32..267 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:55 Download gff for
FMO05071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5644728..5645297 | 268..839 | 99 | <- | Minus |
| arm_3R | 5645362..5645597 | 32..267 | 98 | | Minus |
