Clone FMO05072 Report

Search the DGRC for FMO05072

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:50
Well:72
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05072.5prime Sequence

792 bp (792 high quality bases) assembled on 2008-08-11

> FMO05072.5prime
ATTATACGAAGTTATCAGTCGACATGGAGCTAACTCTCGCCCTCGTCCTG
CTGTTCGGATGTGCGTCCACCTACGGACACGCCTCCGATTTCCCCTCGGG
CATCGAGAGGTGCGCCATAATGGACGAGCAGTGCCTGGAGGACAGGGTGA
ACTTCGTGCTCAGGAACTACGCCAAAAGCGGTATCAAGGAGCTGGGCTTG
ATCCCCCTCGATCCGCTGCACGTCAAGAAGTTCAAAATCGGACGCAATCC
GCACAGTCCGGTCAACATCGATCTCAGCTTCCACGAGATGGACATCTTGG
GTCTGCATCAGGGAGTTGCGAAGCGAGTGAGCGGATTCACAAGGGATCTC
AGCCGCTCCATCGAGCTGGTCATGGAAGTTCCAGAAATAGGAGTCAGAGG
ACCCTACTCGGTGGACGGAAGAATACTCATTCTGCCCATCACCGGAAATG
GCATTGCTGACATACGCCTCACTAGAACAAAGGTACGTGCACAGATCAAA
TTGAAGCGCGTCTCCAAGGGCGATCATCAAACCTACGCCGAGGTGATGAA
CATAAAGGTTGAGCTGGATCCATCCCATGTGACCTACCAGCTGGAAAATC
TGTTCAACGGCCAGAAAGATCTCAGCGAGAACATGCACGCGCTTATCAAT
GAGAACTGGAAGGACATCTTCAATGAACTGAAACCGGGCATTGGCGAGGC
CTTTCGGACTGATAGCCAAGTCGGTGGTGGACAGGATCTTTGGCAAACTG
CCGCTCGAACAGCTCTTTGTAGTCGCAAGCTTTCTAGACCAT

FMO05072.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11854-RB 1039 CG11854-RB 39..788 24..774 3730 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25242710..25243011 472..774 1465 99.7 Plus
3R 32079331 3R 25242204..25242441 94..331 1190 100 Plus
3R 32079331 3R 25242506..25242647 330..471 710 100 Plus
3R 32079331 3R 25242058..25242127 24..93 350 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:25:48 has no hits.

FMO05072.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:55 Download gff for FMO05072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11854-RB 31..797 16..783 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:19 Download gff for FMO05072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11854-RA 2..768 16..783 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:50 Download gff for FMO05072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11854-RB 31..797 16..783 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:50 Download gff for FMO05072.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25242710..25243020 472..783 98   Plus
3R 25242050..25242127 16..93 94 -> Plus
3R 25242204..25242441 94..331 100 -> Plus
3R 25242508..25242647 332..471 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:55 Download gff for FMO05072.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21067772..21067849 16..93 94 -> Plus
arm_3R 21067926..21068163 94..331 100 -> Plus
arm_3R 21068230..21068369 332..471 100 -> Plus
arm_3R 21068432..21068742 472..783 98   Plus