FMO05081.5prime Sequence
1131 bp (1013 high quality bases) assembled on 2008-08-11
> FMO05081.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGGGAGT
TATTTTTTCTAGCAGCACTATTAGTAGCGGGTAATGCCCTTCCTATTGAG
GAGCGTATCAATGGCGAAAATGGGTGGTTTGTGCCCCAGGAGGATGGCAC
ATTTCAGTGGATGGACAAAAAGGACGCTAAAGAGCTCTTAGAAAACATTT
CCCCTCTCGAATTCCGTTCCAATGAAGTGTCCTTCTATCTGTACACCAAA
CAAAACCCGACGGAAGGCCAAGAAATTACTGCCGATGCTTCTTCAATTGT
AGCTTCTCATTTCAACAAGGACCATGGAACGCGTTTTGTCATTCATGGAT
GGAAGGGAAAATATACCGATAGCATGAATGTCGATATAACCAAGGCCTGG
CTCTCAAAGGGAGACTTTAACGTGATCGTTGTGAACTGGGCTCGGTCCCA
GTCCGTTGACTATGCCATGTCCGTACGAGCTGTTCCTGGAGCTGGAACCA
AAGTGGGAGAGATGATCCAGTACATGCACGAAAATCACGATATGTCACTT
GAAACCCTTGAGGTGATTGGACATAGTTTGGGTGCCCATGTGGCTGGTTA
TGCTGGTAAGCAAGTTGGGCAGAAGAGAGTCCACACGATTGTGGGTCTGG
ATCCTGCCCTGCCCCTTTTCAGCTACGATAACCCGGACAAGCGTCTATCT
AGCGAAGATGCCTTCTATGTCGAGTCCATCCAGACCAATGGTGGCGTAAA
GGGATTCGTAAAGCCCATTGGAAAAGCCGCATTCTATGTGAGTGGAGGAC
GGAAACAACCAGGATGTGGAGTAGACCTTGCAGGAACTTGTTCCCATGCC
CGGTCCGTGATTTACTACGCCGAGGCCATCACCGAGAATAGTTTCCGAGC
TATCCAGTGCCAGGACTACCAAGCTGCTCTGGACATGAGTGTGGCAGCTC
TTCAGCAGCGTCCGCATGGCAGAGGAATACGAATGCGTACAATGTGAAGG
CCACTCTATGTGCTTGTAAACAGGGAAGCTCATTCGGGCAAACTGAAGCA
GCTTTCTAGACCATTCGTTGGCGCTGGGGCCAGGTATGGTCATACCTATC
ATATACTATCATATACTCAACTAGCTAAGAG
FMO05081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17192-RA | 1052 | CG17192-RA | 4..1016 | 39..1047 | 4830 | 98.8 | Plus |
| CG17191-RA | 1090 | CG17191-RA | 69..911 | 85..927 | 1320 | 77.5 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 380..877 | 389..886 | 615 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27017216..27018187 | 1047..80 | 4475 | 98.8 | Minus |
| 3R | 32079331 | 3R | 27018787..27019629 | 927..85 | 1305 | 77 | Minus |
| 3R | 32079331 | 3R | 27020444..27020941 | 886..389 | 600 | 74.7 | Minus |
| 3R | 32079331 | 3R | 27022386..27022510 | 768..644 | 265 | 80.8 | Minus |
| 3R | 32079331 | 3R | 27025260..27025403 | 787..644 | 240 | 77.8 | Minus |
| 3R | 32079331 | 3R | 27018240..27018284 | 83..39 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:11 has no hits.
FMO05081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:56 Download gff for
FMO05081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17192-RA | 1..1019 | 37..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:30 Download gff for
FMO05081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17192-RA | 1..1019 | 37..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:33 Download gff for
FMO05081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17192-RA | 1..1019 | 37..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:33 Download gff for
FMO05081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27017213..27018186 | 81..1051 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:56 Download gff for
FMO05081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22842935..22843908 | 81..1051 | 98 | <- | Minus |
