FMO05085.5prime Sequence
943 bp (943 high quality bases) assembled on 2008-08-11
> FMO05085.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGCCCCAAACATG
GATTGTGAACAGCGCGGCGATATAGATAGCGTCTTCGGCTGGATCGCCAA
TCTTTGCAACAAAGAAACGCGTCTCTGGGCGATGCTGGAGCTATTCGAAA
GGCGCACCCACATTGACAGCCTAGGACTCTTGCTATGGCATTCCTTTGGA
GCTGTGAGTGGCTTGCTACAAGAGATTGTGTCAATATATCCGGCCATTTA
TCAAGAAATTGAATTAACCGGCCAACAGTCGCACCGGATTTGCACTGCCA
TTGGGCTGATTCAGGCTATGGCATCACATCCCTTCATTGGTATTCAACTC
ATACGATGCCAATTCATGTGCTATTTGATGCCATTGCTTAAAATGACTTC
TCAAACTCGCGCCGTTGAGCATGTTCGTCTCTCTGTCTTGGGCGTCATTT
GCGGTCTACTGAAATCAGATCATCCGGAGATCGTATCTTATTTTTTGGGC
ACTGAATTAATTCCACTTACCCTGCGGCAGCTGGAGTTTGGTACCACAAT
GAGTAAGGTGCTCTGTGCATTTGTCTTGTACCGCACCTTAGAACATGAAG
TGGGCTTAAAGTTTGCCAGTCGAAGACTGGCACGAAAGCTGCATCTGATC
CATACTTTGGCCAGGGTTGTGCACCAACTCACACTGGAACCGGAGCCTAG
GGTCCTTAAACATGTAGTAAGGATCTATTCTCGTCTGGCTGATCATCCCC
AAAATCTGGAGCTGATCCTTAAGCTATTGCCGGCTCAGATTCGGAACGGC
TATTTTTGCCAGGAAGGTTTAGTGGGCTTCGAGAGCGCTTCTCTAGAGCT
AGCTGATCTTAACCGTAAGCTCAGTAAAAATGAGGAAAAAGGACAAGGTT
TGTGATGATGCCATGCCGGAAACCATGCAGCTTTCTAGACCAT
FMO05085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2053-RB | 1374 | CG2053-RB | 154..1042 | 33..922 | 4425 | 99.9 | Plus |
| CG2053-RA | 1231 | CG2053-RA | 154..1042 | 33..922 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32038483..32039339 | 33..889 | 4285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:22 has no hits.
FMO05085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:26 Download gff for
FMO05085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2053-RA | 111..1011 | 33..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:58 Download gff for
FMO05085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2053-RA | 111..1011 | 33..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:57 Download gff for
FMO05085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2053-RA | 154..1054 | 33..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:57 Download gff for
FMO05085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32038483..32039347 | 33..898 | 99 | -> | Plus |
| 3R | 32039398..32039433 | 899..932 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:26 Download gff for
FMO05085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27864205..27865069 | 33..898 | 99 | -> | Plus |
| arm_3R | 27865120..27865155 | 899..932 | 91 | | Plus |
