FMO05094.5prime Sequence
1228 bp (65 high quality bases) assembled on 2008-08-11
> FMO05094.5prime
TTCGTATAGCATACATTATACGAAGTTATCAATCCACATGCATAAACGTA
AACGCCGCTTCCTAAGAAAAGGGCAGAACTTGATGATGCTGCGGACGCTT
CGATTGGAAAAAGCCAAAAAGGCTGAGCTCCAGAAAGAGCTGACTATTTA
CAATGCTTTAACCCAATGTAAATTAACCTCCTCGGAAGTTGTTCCCGACG
TCAATAATTTACTTGACACCAATACTATAGGAAACCTGGTGGAGTCCCTT
GGCCACGGAAATAAAAAAAAAATTCGAGCCGACTCCGCAGATGCTTTATC
TCAAATAGCCTGTGGCTCATCGGAGCACTCAAATTTAATTGCGAAGGCTG
GCGCCGTGCCACCATTGATTCGCCTTCTTCACTCACCCGATCCTGAAGTC
TGGGAAAAGGGTATATTGAGTTTGGGGAATCTCTTGCCCTTTGCTCCGAA
CCTCCATGACTATATCATAATACACGGACTTATGCGAAAGCTGATGTCAA
TTATTCACGATAAAAGCACTTGCACTTTAATGTTGACTCGTGTCACCTGG
GTTCTAAGAAAACTGTGCATAAGCTCTCAACCATCGCCACCTGATGATGC
AGCTGAAATCATTCAGGCATTGAACATAGTATTGTACAACCCAGAGGCCA
ACGTTTTAGAGGACGCACTTATGGCAGTGCGTAATTTGGCCCATGGAAAT
GAAACGATTCAAATGTTACTTGATTTTGAAGTTGTACCCAGGATCATATA
CTTGCTGGAGCATCCGAACGTTACGGTTCATAACGTCGCACTGCAGCCCT
AATAAATATAGCACTGGATCCGAAGAGCAGATTCAAGAGTTGCTTAACAT
AACCTTTTGCCCCATTTATCGGCTCTGATGTCCAATAGTGATCCAGATAT
CGCTGTCAAGTTCTTAAGCTTTTGCTAAGCATCGCTGACGGAAAATATAT
ACAAAGGCACGCCATTATGACTGCAGGTCTCATGCATACATACTGGATGC
ATAAAAGCTGATGCAATTCATTAAATCTGCTCTGCCTTGACTATCACCAC
GTTGTCTCGTAAGGACATGAATATCAGGGGCATTCTATGATAAAGGATGA
GTTAGGTTCTGCACTAACTCTTCCGCATGACAGAACTTCTAACTATGGCT
CGAATACCTGGACAATGCTGAGAGTGGATTACCTATTCGGACAGGGTTCC
GCCTCACAAGGGAGAGGGACTTTGATGA
FMO05094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1509 | CG10478-RA | 71..1117 | 38..1072 | 4270 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6009859..6010584 | 1054..338 | 2730 | 94.6 | Minus |
| 3L | 28110227 | 3L | 6010652..6010951 | 337..38 | 1275 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:20 has no hits.
FMO05094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:11 Download gff for
FMO05094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 65..1112 | 31..1067 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:13 Download gff for
FMO05094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-RA | 1..1042 | 38..1067 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:25 Download gff for
FMO05094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 65..1112 | 31..1067 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:25 Download gff for
FMO05094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6009843..6010584 | 338..1067 | 94 | <- | Minus |
| 3L | 6010652..6010957 | 31..337 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:11 Download gff for
FMO05094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6002943..6003684 | 338..1067 | 94 | <- | Minus |
| arm_3L | 6003752..6004057 | 31..337 | 94 | | Minus |
