FMO05103.5prime Sequence
999 bp (484 high quality bases) assembled on 2008-08-22
> FMO05103.5prime
ACCTCGGAATATGTGCAGGATAAGTTGCGCACCTACTTCAAGGATAGCTC
ACTGAAGCTGGCGACGTTGGATACAAAGCCAGCCGTGGCCAATGGAGGAA
ACTACGGCAGCGTGATGACCCGCATCAATGTGGAGTACACGACCAAGGTA
TCGAAAGGGAAACAGTCCACCACATTTCTGGTTAAGACCACATTCGCTGA
CCGGGATCCAGCCGGCGATGTGCTCATCCACTATGGTGTCTACACCCGTG
AAATGGATATATACGAGCACATCCTTCCCCAGCTGGCGGATATGGTGAGG
AAGGAGCTTAAAGACTCCAGGAAGCTCTTTGCGGCCACCATGAATGTGGA
CCGCGAAAGGGACTCGATCATCTTCGAGGACATGTCACTGGATCATTACA
AGGTTGCATGCCGTCGAAAGAAGCTGGACCTATAACACACCCACCTGGTA
CTGGAGAAAACTGGCCCTCTTTCATGCAGCTTCATCAGTTCTCGCCCAGC
GACAGCCGGGTATCTTTCGACAAGAACTATGATTGTGGCTTTTTCAACAA
ACACACCCGGGCATACGTCCCGATCATGACCAATCTTCTGGAGGCTCTGT
CCCGCTCCCTTGCTTCGGATGAGGAGTTGGGACAGCGGTACAAGGCCAAG
ATCGACAGGCTTGTGCAACGTTTTGATGGCTATGGCGAAAGATCGAGACT
AGTAGTCCTGCGACTTATTAATTCTGGCCCATGGAGATCTTTGGACCACC
AACTTTATGTTCCGTCCGATGCAAGATCATCCCACGAATGTCATCTTCAT
TGACTCCAGTTATCGCGGTGAACTCGCCGGCATCAACTTCCACTACTTCT
TCCCCGCTTGTTGCAAGAATATCTTCCCTTGGAACTTAAAGAATTGTTCA
GATTATTACTGGGCTGCGAGCCCTAGGAAGTTAATATGCGGTCGAAACTC
ACTCGTCAAATTCAACTGATTCGCTCGAAAAGTTTCTTGCCTTATTTCG
FMO05103.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11878-RA | 1345 | CG11878-RA | 60..981 | 1..910 | 3805 | 95.2 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 130..854 | 91..811 | 510 | 72.8 | Plus |
| CG11889-RB | 1317 | CG11889-RB | 152..876 | 91..811 | 510 | 72.8 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 1856..2482 | 231..851 | 350 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25273896..25274787 | 1..885 | 3520 | 95.5 | Plus |
| 3R | 32079331 | 3R | 25270360..25270820 | 91..553 | 445 | 74.1 | Plus |
| 3R | 32079331 | 3R | 25272144..25272371 | 231..458 | 270 | 74.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:57:24 has no hits.
FMO05103.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:39 Download gff for
FMO05103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 60..934 | 1..868 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:00 Download gff for
FMO05103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 60..934 | 1..868 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:56 Download gff for
FMO05103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 60..934 | 1..868 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:56 Download gff for
FMO05103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25273896..25274770 | 1..868 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:39 Download gff for
FMO05103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21099618..21100492 | 1..868 | 96 | | Plus |
