FMO05105.5prime Sequence
1202 bp (908 high quality bases) assembled on 2008-08-22
> FMO05105.5prime
ACATTATACGAAGTTATCAGTCGACATGTCTCTATCATCGTCTTCGAAAT
TTCTTATATGGACCTTCTTTTTGGGCCTATTCCAGCTGGAAGCCAATGCA
TTTTTCAATCCTTTTCAACTGGCTATACCTTCATCAGTTTTAGAAGATGC
ACACTTGAATACGATACAATTGATTTCCAAATATGGATACCCGGCGGAGA
ATTACACAGTGCAGAGTGACGATGGCTACTTATTGGGACTCTTCAGGATC
GCACGTCCTGGAGCCCTGCCTGTGCTGCTGGTCCACGGACTAATGGACAG
TTCCGATACCTGGGTGATGATGGGTCCTTCCAGTTCCTTAGGATACATGT
TGTACGAGCAGGGCTACGACGTCTGGATGGCCAATGTGCGGGGTAATACC
TATACGAAACGCCATGTTCGTTACTCCGCCGAAGACTCCGATTTCTGGAA
CTTTTCGTTCCATGAGATGGGCATTTTCGATCTGCCTGCCATCATTGATT
ACATACTGATGCAATCTGGATTCGGTCAGTTGCACTACATTGGTCACTCC
CAGGGATCAACTATCTTCTGGATTTTGGCCAGCGAAAGACCAGAGTACAT
GGAAAAGATCGTTATGATGCAGGCATTGGCTCCAGTGGCCTTCCTGTCCC
ATTGCCGTAGTCCCATTGTGAATTTGTTGGCCTCTCAGGATACTGCAGTT
GCCTCCTTCCTAAGCGCGGCTGGCTACAATGAGTTCCTGCCCAGCAACAG
TGTGATTGATCAGTTCAAGCGTTATGCCTGCCGGGATATCATTTCCAGCA
GTGTCTGTCAGAGTCTCTTCTTTATTCTTTTCGGGTTTCAATGGCCAGCA
AGTGAACCAAACGATGTTGCCCGATCGTAGTGGTCCCACTCCGGGCCGGT
GCATCCATCAGCAGATGCATAACTACGTCAGCTGAGGAACTTCTGGGAAA
ATCCAGCAGTTTGACTACGGACTTTTGAACTTCCTGCAATTATGGCAGCC
TGTCCCATGCCTTATGAACTGAGAAAGTCAGCCAAGTTGCATCTATTATG
CTAAACGATTGATGCTCGCCGAAATGTGACTGCTTCCGAGTTGCATGTGT
GAAGATCTCGTTCGAATGACTTACCCATCGATGTTCTGGGCGAATGCAGA
TCGGATCAGTCTGATTACATACTGTTCAATCCTCTAAACTGAATAGCCAG
TA
FMO05105.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18301-RA | 1371 | CG18301-RA | 32..1066 | 26..1055 | 4700 | 97.7 | Plus |
| Lip4-RC | 1936 | CG6113-RC | 456..955 | 146..645 | 385 | 73.4 | Plus |
| Lip4-RB | 1861 | CG6113-RB | 605..1104 | 146..645 | 385 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10532567..10532930 | 340..703 | 1820 | 100 | Plus |
| 2L | 23513712 | 2L | 10532986..10533286 | 704..1006 | 1040 | 95.4 | Plus |
| 2L | 23513712 | 2L | 10532334..10532513 | 163..342 | 900 | 100 | Plus |
| 2L | 23513712 | 2L | 10531852..10531989 | 26..163 | 690 | 100 | Plus |
| 2L | 23513712 | 2L | 10530305..10530617 | 333..645 | 290 | 72.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:57:57 has no hits.
FMO05105.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:52 Download gff for
FMO05105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18301-RA | 23..1048 | 15..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:01 Download gff for
FMO05105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18301-RA | 1..1017 | 26..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:13 Download gff for
FMO05105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18301-RA | 23..1048 | 15..1039 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:13 Download gff for
FMO05105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10532986..10533324 | 704..1039 | 93 | | Plus |
| 2L | 10531843..10531989 | 15..163 | 97 | -> | Plus |
| 2L | 10532335..10532512 | 164..341 | 100 | -> | Plus |
| 2L | 10532569..10532930 | 342..703 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:52 Download gff for
FMO05105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10531843..10531989 | 15..163 | 97 | -> | Plus |
| arm_2L | 10532335..10532512 | 164..341 | 100 | -> | Plus |
| arm_2L | 10532569..10532930 | 342..703 | 100 | -> | Plus |
| arm_2L | 10532986..10533324 | 704..1039 | 93 | | Plus |
