FMO05106.5prime Sequence
1286 bp (848 high quality bases) assembled on 2008-08-22
> FMO05106.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGAGCTCTTTCACCGCCC
ACCTGTTGATATTGCTCCTCGGTGGTCTGCTGCTAACTCATCACTGCGTC
CAAGGTCAGGCGAGTAAAGTGTCCTCCAAGTTGGATTTCGATGAGAGCGA
TGGCAGCAACAATCAGAATCAGACGGGCTCACCCGGACAACCGGGACAGG
CGGGCGGAACTGGCAATGGGAGCTACGACCCGGGAACGGGACGAAGCCTG
AGTGGTGGAGGAGGAAATGCAGGCGGGGGCAGCAGCGGAACTTCCAGCGG
GGGAAATCGCCCCAAGATCCACGGAGTACGGGTCACCGTCGATACGGGCG
ATGGACAGCAGCAAACGAAAGAGTCCAAGGAGAGCGTGGAAATTACGGAT
TTGGGCAAGCACAAGAAGCGCGTGGGCATCCACACGGACATCACGTTCGA
AATCACCTCCGATTCGGACGGGAACGAGACCAGTTCCGCTCAACAGCAGG
GCGACAAGGAGGACGCCAGTGTGCCAATTTTCAAGGGTCGTGGTGGCAGC
GAATCAAAGCACAAGACCCGCAAGCCATATGATCCCAAGTCGCAGTGGAA
TCCCAACTTCTCCGGCGAGCAGCATGGCTACCAGGGCGCCAATCGAGCTG
GCTACCAGGGCTCCAATCGCGGCGACTACTATCCGCAGTACTATCACGGC
AACGTCTATGCCGGCGGAAGTTCCGATGCAGGCAGCAATTACAGGAACGG
CGAGACCTGGACGCACTACGTCCCGGTTTGACCACGGAGCGAGTGCCGCA
GGAGCAGGGACAGATCTATCGGCGGCCCAGCTGGAAGCCCTGCTACTGCA
TGTCATCCACGGAGTTCAGACGCCGTCGGGATAGCAAAGCCAGAAGAGAG
CAAACTGATCCACCACACCAAGGGTGTCATCAACAGTGGGGTGTCCAGGT
GGTGGCATGGCAAAGTTGGAGCGGCCTTTTCTTCCGCAAGCTTTCTAGAC
CATTCGTTTGGCTGGCGGGCCCAGGGTAAGTGGTTATTATCATATTCATA
ATCATATATCTTAATGTACAGCTAGCCAGGGAAATCCTTGGTCTTGACTT
GTGGCTTGGAATTCTCCCCAATATGACCGCCGCGGGCAACCGTAACTTCT
TGAACATTCGTAATGGGATTTTCTGAGTGCTTTATGGTATCTTATCCAAC
TGGATCCAAGCTGACTCTGATTATCCTATTTACTGCTCGCCCCCTCTGGT
CACCTATTCGATAGAACGAGTGTGTTGTAGAATTAC
FMO05106.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17350-RA | 1115 | CG17350-RA | 77..1029 | 27..979 | 4540 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19382538..19383007 | 509..979 | 2025 | 97.7 | Plus |
| 2L | 23513712 | 2L | 19381863..19382131 | 103..371 | 1345 | 100 | Plus |
| 2L | 23513712 | 2L | 19382196..19382335 | 370..509 | 700 | 100 | Plus |
| 2L | 23513712 | 2L | 19381012..19381086 | 32..106 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:53:39 has no hits.
FMO05106.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:15 Download gff for
FMO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17350-RA | 70..1033 | 18..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:03 Download gff for
FMO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17350-RA | 70..1033 | 18..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:27 Download gff for
FMO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17350-RA | 70..1033 | 18..985 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:27 Download gff for
FMO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19380999..19381084 | 18..104 | 94 | -> | Plus |
| 2L | 19381865..19382131 | 105..371 | 100 | -> | Plus |
| 2L | 19382198..19382335 | 372..509 | 100 | -> | Plus |
| 2L | 19382539..19383011 | 510..985 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:15 Download gff for
FMO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19380999..19381084 | 18..104 | 94 | -> | Plus |
| arm_2L | 19381865..19382131 | 105..371 | 100 | -> | Plus |
| arm_2L | 19382198..19382335 | 372..509 | 100 | -> | Plus |
| arm_2L | 19382539..19383011 | 510..985 | 97 | == | Plus |
