FMO05107.5prime Sequence
1296 bp (945 high quality bases) assembled on 2008-08-22
> FMO05107.5prime
TATAGCATACCTTATACGAAGTTATCAGTCGACATGTCCGGGAACCCCCA
AAACAACCAGTTTAACGATGACGAATTGGTGCCACCTGAGTGGCTCAACT
CCGAGTTCATGGCTCGCGTTTTGGAAGGCAATGAGCTGGAGGCCGCGGTC
AAGGTTATCGATTTGACCTTCTCCCCGGCGAGTGCGAAGGGAGATCACTA
TGCCAGCATCATGTTCCGGGCAAGGGTGAAGTACACCAACCGAAAAGGCG
AGTTCCAGAAGTCGCTGATCATCAAGACAATGCCAGAGGCAGAGGGACAC
AAGAAGGATATGCTCGGAGGATCGCCCATATTCGAAACGGAGATGGGATT
GTACACAAAGGTGCTGCCCGAGTTCGAGAGGATCCTTCGACAGGTCGGCG
ATGACACCCAGCTATATGTGAATTGCATATACCACAGCCTGGAGCCGCAT
CAGGTCCTGATCTTTGAGGATCTGGCCGAGATGGGTTACATTGTGCTACG
GGATCGGGACGCCACATTAGATGAGATACGACGCATCTACTTCAAACTGG
CCAAGTGGCATGCAGTCAGCTTGAAAAGTGCAGAATGAGCAACCAGAGTT
CCTAGAGTCGTACACCCATGGACTGTTTGAGATGCCACATGTCCTGAATG
ATCCCTTTATGAGATCTGGAATGGAATTCTTCGTTGAGCTTTTGGGAAAG
GAGCCGGAGTTGAATAAGTATAAGCCGTACTTCGAAAGCATCAAGGACGA
TTTCCTAGAGCGACTTGTTGAAGAGTGGAAAGGACATTCGAAAGAGCCCA
GAAAAAAGACGAGTACTGGGTACTTTGCCCACGGAGACCTGCACCTTCGA
AACATTATGTTCAAGCATAAGGATACTGTATCCTTAGAGGACTGCATGCT
GCTGGGACTTTCAAATCAGTAATCTTCTTTCCTATGACATTCGATCTTAC
TTGTTTCGATTTACATGCTTTTGGGAGCCGGGAGCATCGATGGAATTACT
GGGATGACCTCCATCAATAATTACATCTCCGTTCTGCAGGATTGTCTAAA
GAAGATCGGCTTAAATGGCGTAATGCCCATGTCATTCGGGTCTTTGGGAA
CGCCCTGCATCAACCACAGTACTAGTGGTTCCTTTCTCATTAGCACCTTT
TCTACGCGTGAATGTGGGCATTGTAGGGGATAAGTCCGGTTGACCTTGGG
CAATCTGCTTCGAATACAAAAAGCTAAGAAAATGTCTCTTTTTTCATAGG
GCTACTTTAGTAAACTCCCCAATATGTGCTCGTGGTCCTACACGCT
FMO05107.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31436-RA | 1402 | CG31436-RA | 78..1269 | 34..1243 | 5060 | 96 | Plus |
| CG13659-RA | 1301 | CG13659-RA | 126..460 | 151..485 | 325 | 73.9 | Plus |
| CG31300-RA | 1474 | CG31300-RA | 219..508 | 181..470 | 310 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25304214..25304768 | 34..589 | 2730 | 99.8 | Plus |
| 3R | 32079331 | 3R | 25304819..25305344 | 588..1124 | 1850 | 94.4 | Plus |
| 3R | 32079331 | 3R | 25283838..25284127 | 181..470 | 310 | 73.8 | Plus |
| 3R | 32079331 | 3R | 25285681..25285968 | 188..475 | 270 | 72.9 | Plus |
| 3R | 32079331 | 3R | 25287749..25287926 | 298..475 | 185 | 73.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:58:17 has no hits.
FMO05107.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:58 Download gff for
FMO05107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31436-RA | 78..1244 | 34..1219 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:04 Download gff for
FMO05107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31436-RA | 38..1204 | 34..1219 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:25 Download gff for
FMO05107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31436-RA | 78..1244 | 34..1219 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:25 Download gff for
FMO05107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25304214..25304768 | 34..589 | 99 | -> | Plus |
| 3R | 25304821..25305346 | 590..1125 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:58 Download gff for
FMO05107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21129936..21130490 | 34..589 | 99 | -> | Plus |
| arm_3R | 21130543..21131068 | 590..1125 | 94 | -> | Plus |
