FMO05108.5prime Sequence
1263 bp (1043 high quality bases) assembled on 2008-08-22
> FMO05108.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGCGCATTC
ATGTGGATAACTACGCCCCAAAGTACTATAGCGGCAAGTGGTCATGGGAC
TCGGAGAAAGACTGCCTCCACTTTCAGGCGCACAACGATCTGGAAAACGC
AAGAGAGCGCTATATTATGACCAATGGCTACAGGTTCCTGCGCACAATAG
ACCAGGAGGAGGAGCTCATCTTCCGACAGGAGTATGTGCTACCGAAAAGC
AACTATAGTGACGTTGTGGTGGTCGGAGATATTAGAAACTTGGTTCTCTA
CCTTATGCCTTCAGAATTTCTAACCTACAAGTTCGTTGAGTTCATGTACG
AGCGGGATACGCACTTGTTGCTTCACTCCCTGATTATATACTTTGAGCAC
TATTTGCGACTGGTCGAGTTTATACTTATACGTCGGGATGAGCTTTCCGG
TCCCCTGGGTCAGGTGCAGAGCGAGCAGACCAACGATATGAAACGAACCT
TTTCGGTATACTTAAGCCAGTATCGTATGCTTGTTGCACGAAACTACTGC
CGCATCATCGGGGGCGAGGATAATATGTCCAAGTACTACCACATGAAGCC
GATTTCCAACATTTCAGCAACAATCCACGATAAGTTTTTCCATGAGCATT
TTCTGGCAGTGGCCATCCAAATAGTCTGGATCTGTATGCATCGCCGGGCG
TATTACGTAATCGAAATGGAGATCAATCGCCTTTTCCGCTCCGAGCACTT
TGTTTCCGCCCACCCAGAATACCTCGAGTTCACGGAGGCGGAGCGCAGTC
TTCTCTACAGCAGAAACAAAAAGAACTACAATTATCGAATTCAGGAATCG
CCTCTAGTCCAGGAGCTAAAGCTGGTTCCTGAAGAGGATTTGCCCATTTT
GTGGATAGGCGAACGCAAGTACAGAGGAAACGATATCCGCATTGCCGAGA
TGAGCTGGAGTACATTGTGCCCGATCGCAGCTCAGCTTATAGATGTATCG
CACGGCATCATGGGCCATCCCAGAGCCTCTACAACCGCTTCTTAGTCTCG
ACTGTCGGCTGTCCGCTTCTCAACTTCTCGGAAGTTCGATCGTACATTAA
TCAGGAGACCTTCACTGCAATACAGATAGGTGACTCGAATGCGTTATGGA
AGAGAAATTTGACTCGAGGCTTGTAAGTCATGGAGCGTCACACACGATCG
CATGTAACGAACTCATGGCTTCTTCGCTCGGAGTCTCATCCTAAGCAGAC
ATTGTCCTCTCAG
FMO05108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31467-RA | 1694 | CG31467-RA | 130..1241 | 38..1133 | 5100 | 98.1 | Plus |
| CG31391-RA | 1704 | CG31391-RA | 99..1138 | 50..1082 | 1890 | 79.5 | Plus |
| CG14689-RA | 1661 | CG14689-RA | 526..1038 | 460..971 | 410 | 72.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10705682..10706734 | 1083..38 | 4870 | 99.1 | Minus |
| 3R | 32079331 | 3R | 10704037..10704977 | 988..50 | 1785 | 79.8 | Minus |
| 3R | 32079331 | 3R | 10710947..10711140 | 230..37 | 400 | 80.4 | Minus |
| 3R | 32079331 | 3R | 10710211..10710723 | 971..460 | 370 | 71.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:37 has no hits.
FMO05108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:36 Download gff for
FMO05108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31467-RA | 130..1228 | 38..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:06 Download gff for
FMO05108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31467-RA | 130..1228 | 38..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:05 Download gff for
FMO05108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31467-RA | 130..1228 | 38..1123 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:05 Download gff for
FMO05108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10705636..10706734 | 38..1123 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:36 Download gff for
FMO05108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6531358..6532456 | 38..1123 | 98 | | Minus |
