FMO05109.5prime Sequence
857 bp (343 high quality bases) assembled on 2008-08-22
> FMO05109.5prime
CCCCTACGACTTTATCAGTCGACTGAGTACCGCTAATCATTTTCAAAAAT
TCTTGAGAAATTGTCAATCTCTGACAATGAAAGGGCCGTATATACCAAGG
AAGCCCAGGAAATTCAAAACTATGTAGTTGACGAACTTAAGCGGGTAGAC
AAAACCTTTCGCCAGGTATTCGACGGACTCAGTCTTGGAGGAAGTTACTT
GGATCGCGTCAAGCTAAATTTGCCCGATGAATTTGATCTGCACATGAAAC
TAAAGTTTCCATTTGATATCCGACCGACTCGGATCGACCAAGGGTTTATT
TATTTAAAGGCTGATCTCACCGTAATCAATCCCCAACGCATCCATCGTAT
TGTACTTCAAGACTGGCTACGCAATGCATTCCGCAAGGTATTCAGGTCTA
ATCACACAATTGCCACTACCAGTAATCGAGTCTACAAATTAACCTATACT
CTTGAGGGGAATGGTTGTGCCCATACCATTTTACCCGTTTGTGGAAATCG
CTCGATATCTTTTGATTTGGTACCAGCATTCGAATTCTCAGGAAGACAAT
GGCCGTTTGATATTTGCCCGGTTCCTGTTGATGTTAGATTAATTGGTGAT
GATTCGCCTTTCCGCAACACAAAAAAAAGTCCGCTAAACCGAGAACCCAC
TTTCTGGTTTGTGCCCTCATTGCAAACGCGAAAATATGAATGGCAAGGAT
ATTTTGAAGAACGATCTACGGTTGATGATAGGATTGCGGGATGCCCACGC
ATGGAATTTGCTTCTGTTGTCCATGCTACATGTTGAAAACAGTGTGCTTC
ATCGCCTCAAAAGTGGTGACTGAGAAAAAAACCATGGGCCCCCTATTGGT
TGAGATG
FMO05109.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-RA | 1365 | CG7194-RA | 71..906 | 24..857 | 3350 | 93.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8302823..8303492 | 857..189 | 2420 | 92.4 | Minus |
| 3L | 28110227 | 3L | 8303821..8303989 | 191..24 | 780 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:20 has no hits.
FMO05109.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:54 Download gff for
FMO05109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 71..906 | 24..857 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:07 Download gff for
FMO05109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 47..882 | 24..857 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:31 Download gff for
FMO05109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 71..906 | 24..857 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:31 Download gff for
FMO05109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8302823..8303490 | 191..857 | 92 | <- | Minus |
| 3L | 8303822..8303989 | 24..190 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:54 Download gff for
FMO05109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8295923..8296590 | 191..857 | 92 | <- | Minus |
| arm_3L | 8296922..8297089 | 24..190 | 98 | | Minus |
