FMO05112.5prime Sequence
1017 bp (950 high quality bases) assembled on 2008-08-22
> FMO05112.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGGGCGGCAAC
TACCCCAGCCTCGGCACGTGCAGTGGCATCAATGTCAGTGGCAACGTGGC
CGGCACCCGCAAGATGTCACTGGGCAAATCCATTAAAATGTACCTGACCA
TTTTCATCCTGACCACCTGCATTTATATGGCGCTCTATCAGTACCACATA
TCCCGTGAACCCTTCGCCGCCAGCGAGGTTGTCAAGCCGCCCCTGTACAT
AATCACGCCCACCTACCGACGACCCGAGCAGCTGGCGGAGCTCACCCGGC
TGGGATATACGCTGAAACATGTGGTGAATCTACTCTGGCTGGTCATCGAG
GATGCCAACAAGACGAATCCGCTGGTGGGCCACACTTTGGACCGCATCGG
AGTGCCCTACGAGTACATGGTGGCGCCCATGCCGGAGAAGTACAAGCAGA
CGAAGAAGGCCAAGCCGCGTGGCGTCTCCAATCGGAATCGGGGCCTCGAG
TATCTGCGCGAGCATGCCACCGAGGGAGTGCTCTACTTTGCCGACGACGA
CAACACCTACGACATTAGCATATTCGAGCAGATGCGCTACATCAGCAAGG
TGGCCATGTGGCCAGTGGGCCTGGTCACAAAGACCGGAGTGAGCAGTCCC
ATTATTCAGGCGGGCAAGCTGGTTGGCTACTACGATGGCTGGATCGGAGG
ACGCAAGTATCCAGTGGACATGGCTGGATTTGCAGTGAGCGTCAAGTTCT
TGAAGGAGCGTCCCAATGCCCAGATGCCCTTCAAGCCGGGATACGAGGAG
GATGGGTTTCTCCGCAGTTTGGCACCACTTGACGATGCGGAAATCGAGTT
GCTGGCGGGACGAGTGCAGAGATATCTCACGTGGCACACGCAAACGAAGA
AGAACGCACCCGCTCAGCGCTGAACAGGACGCGCTACAAGAACACGAAAC
TGAAGCACATAGATAGGCTACTGGTGGCGGCCAGCAAGCATTCCTAGACC
ATGCGTATAGGCGCCCC
FMO05112.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlcAT-P-RE | 3161 | CG6207-RE | 747..1694 | 36..983 | 4590 | 99.2 | Plus |
| GlcAT-P-RB | 3427 | CG6207-RB | 1013..1960 | 36..983 | 4590 | 99.2 | Plus |
| GlcAT-P-RC | 3266 | CG6207-RC | 852..1799 | 36..983 | 4590 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11178648..11178941 | 873..579 | 1425 | 99.7 | Minus |
| 3L | 28110227 | 3L | 11183634..11183834 | 236..36 | 990 | 99.5 | Minus |
| 3L | 28110227 | 3L | 11179530..11179718 | 423..235 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 11179224..11179382 | 581..423 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 11178427..11178529 | 976..875 | 420 | 96.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:56:45 has no hits.
FMO05112.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:27 Download gff for
FMO05112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlcAT-P-RC | 852..1806 | 36..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:58 Download gff for
FMO05112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlcAT-P-RB | 980..1934 | 36..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:39 Download gff for
FMO05112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlcAT-P-RC | 852..1806 | 36..991 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:39 Download gff for
FMO05112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11179530..11179716 | 237..423 | 100 | <- | Minus |
| 3L | 11183634..11183834 | 36..236 | 99 | | Minus |
| 3L | 11178414..11178531 | 874..991 | 91 | <- | Minus |
| 3L | 11178648..11178938 | 582..873 | 99 | <- | Minus |
| 3L | 11179224..11179381 | 424..581 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:27 Download gff for
FMO05112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11171514..11171631 | 874..991 | 91 | <- | Minus |
| arm_3L | 11171748..11172038 | 582..873 | 99 | <- | Minus |
| arm_3L | 11172324..11172481 | 424..581 | 100 | <- | Minus |
| arm_3L | 11172630..11172816 | 237..423 | 100 | <- | Minus |
| arm_3L | 11176734..11176934 | 36..236 | 99 | | Minus |
