FMO05113.5prime Sequence
307 bp (307 high quality bases) assembled on 2008-08-22
> FMO05113.5prime
CTATACGAAGTTATCAGTCGACATGTCTGATCGCAAGGCCGTGATTAAAA
ATGCCGACATGAGCGAGGAGATGCAGCAGGATGCCGTCGATTGTGCGACA
CAGGCCCTCGAGAAGTACAACATTGAAAAGGACATTGCGGCCTACATCAA
GAAGGAGTTCGACAAAAAATACAATCCCACATGGCATTGCATTGTCGGTC
GCAACTTTGGATCGTATGTCACACACGAGACGCGCCACTTTATTTACTTC
TATTTGGGCCAGGTGGCTATTTTACTGTTTAAGAGCGGTGCAAGCTTTCT
AGACCAT
FMO05113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ctp-RE | 4061 | CG6998-RE | 216..482 | 23..289 | 1335 | 100 | Plus |
| ctp-RC | 4416 | CG6998-RC | 571..837 | 23..289 | 1335 | 100 | Plus |
| ctp-RA | 1483 | CG6998-RA | 216..482 | 23..289 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4698295..4698455 | 129..289 | 805 | 100 | Plus |
| 2L | 23513712 | 2L | 1344616..1344882 | 23..289 | 720 | 84.6 | Plus |
| X | 23542271 | X | 4691737..4691845 | 23..131 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:15 has no hits.
FMO05113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:49 Download gff for
FMO05113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ctp-RA | 208..487 | 15..294 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:10 Download gff for
FMO05113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ctp-RB | 321..600 | 15..294 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:13 Download gff for
FMO05113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ctp-RA | 208..487 | 15..294 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:13 Download gff for
FMO05113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4691729..4691844 | 15..130 | 97 | -> | Plus |
| X | 4698297..4698460 | 131..294 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:49 Download gff for
FMO05113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4585762..4585877 | 15..130 | 97 | -> | Plus |
| arm_X | 4592330..4592493 | 131..294 | 98 | | Plus |
