Clone FMO05114 Report

Search the DGRC for FMO05114

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:51
Well:14
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12304-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05114.5prime Sequence

956 bp (956 high quality bases) assembled on 2008-08-22

> FMO05114.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTACGAACTGAAG
ACTCTGCTGCCGCAATTCGACATAAAGCTGCCCACCTGCATGTATCCTCT
CAAGAACGTTAGCCTGGCGGCGGATTCCTTGGCCAGCGGCTCCTCCACAT
CCGCATCCACATCCGCGTCCACATCATCATGCGACGATACGGCATCAGTG
GCCGCCCGACAGGAGAAGGTTCTCAAGCAGCTGGAGGAGCTGAAGGCGCA
GCTGGGACAAATCCGGGCGGGACTTGGTGTTTGTGGCAAGACTTTCCAGC
ACACGACTGCTTTCCAGAATGGTGGATTAAAGGAGGTGCCACTGCAGGAT
GTCGTCATCAATGGACATCCCAACTTCATACCCTATGCCTTGTTGGCCCT
GAAAAATGCCTGGCGCAATCTGTACACTATTGATGTCAAGACCTTTACGC
ACTCTACGATGGCCGACATTGGACCAGCAGCACGGGAATTCGAGGCCAAC
TTGGCGAAGGTTCCAGTAAACCCTGCTTTGCCCAAGATTAGTGTGACGCT
CATCTGGAAGAACTGCGAACACACCGAGATGATCAGCTCGCCCACCATGT
ACGTGCCCATCTACGGAGAGGTGAACATCATTCGCTATCTGGGCCGTGTG
GGTCCAGCCGAGTATCGTTATGAGGGCTCTCCGCTCTGCAATGAGATCGA
CCTTGTCCTGACATTTGCTACCAACTGCTGCGCTGCAACACGCACAAAAC
GCAGGTGGCCATGGTGCGCCTGCTGGACAAGCGACTGCAGAAGCAGCAGT
ATTTCGGTGGATCCCAGATGTCGGTGGGCGGATGTCGGTGTCTACAGCTC
ACTGATACGCATGCCAGCTGTTACCGAGAGGATCTGACGCCTGCGCTAGT
GGCTTGGAGAAAAAGGGCCAAGCTCGTGGTTCAAATTGCAAGCTTTTCTA
GACCAT

FMO05114.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12304-RB 1051 CG12304-RB 98..1000 36..937 4445 99.7 Plus
CG12304-RA 1150 CG12304-RA 344..1099 183..937 3710 99.6 Plus
CG12304-RA 1150 CG12304-RA 98..244 36..182 735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15584923..15585296 565..937 1725 99.2 Plus
3L 28110227 3L 15584638..15584869 334..565 1160 100 Plus
3L 28110227 3L 15584287..15584441 183..337 775 100 Plus
3L 28110227 3L 15583735..15583882 36..183 740 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:42:47 has no hits.

FMO05114.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:43 Download gff for FMO05114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 98..1003 36..941 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:11 Download gff for FMO05114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 93..998 36..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:11 Download gff for FMO05114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12304-RB 98..1003 36..941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:11 Download gff for FMO05114.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15583714..15583881 19..182 94 -> Plus
3L 15584287..15584439 183..335 100 -> Plus
3L 15584640..15584868 336..564 100 -> Plus
3L 15584923..15585299 565..941 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:43 Download gff for FMO05114.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15576814..15576981 19..182 94 -> Plus
arm_3L 15577387..15577539 183..335 100 -> Plus
arm_3L 15577740..15577968 336..564 100 -> Plus
arm_3L 15578023..15578399 565..941 98   Plus