FMO05115.5prime Sequence
1216 bp (948 high quality bases) assembled on 2008-08-22
> FMO05115.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAATTCTGG
GAAAACTGCGGGGACAGCCCACGGACCAGGAGAAGGTGCCCCTGCCCATG
AACCTCAACGACGAGGCGCTCATGCACCATGGCTCCCTAATCGCACCCAA
GGTTGCTTACAGCGATAATGAAGCCGACGCGGAATCCATGGTCTTCAACC
GGCCGCAGCACCATTGCATCAAATCCTTTCTGCTGTTCCTGATCGCCGTA
GTCGTGATGCTCCTGGGTGTCCTGGGCGGATGGACCCTGTACCGAGTGTA
CGCTCCGTCGCATAGCAGCATGCGCTACCACGCCCTGTGCGAGATCCCCT
ATCCGGAGGACTCGATGGAGATGGCGCGGGTATATCCGCGCACCGTGGAA
CCGTTCGCCCTGAACTGGCGCTCCTTGCTACCCGAGCTCGCGCAACCGAT
GCCCAACAGTGGATCGCTGGACGAGAGCCACTTCCGCGAGGACATCGAAC
TGGACGGTGACAGCGATGACGAGGGCTACGCACGCGTGGACGTGCCCGAC
TTCAAGGATGGACGTCGTGGTCGCTTCATGCACGACTTCAAGGAGAACCA
GTCGGCCATTATCGACACTACCACCGGACGGTGCTTCATCATGCCCTTGG
ATCGGGACACGACCCTGCCCCCGACCAGCTTTGTGGATCTCATAAAGAAG
ATGAGCACTGGCTACTACAACATAGATACGGAGCGCGTGCGGCGCCAGAT
GCGTGTGGTCATGCCCCGCATCACCGATGTCTCGCTCATCTCGGAGCGGA
TTGCCAACGAGTGCTTCGATATGAAGTCTAATGATGGAGAAGTTCGTCTC
AGGCGTCCTCGAAGAGATCGGCTGATCCGCTGCCGGAGTCAGCCAAGTAC
GCCGAGTTCATGGGCAAAGGCGTCATCGAGTACGACTGTCAACATCGCCG
AGGTGGAGCTACGAGCAACGAGCTAGCACAGCCGCAGCTTTCTAGACATC
GTTGCGCGCGGTCAGTAGTGTCATATCATATCATAATCTAATCATATCCC
ACTAGCTAGGAATCTGCCTGACTAGGCTGATCCCACAATAAAACGCGCGC
ACGAGTTTGACAATCGATGAGTCTAGCTACTGGATATCAAGGATCAGCAG
TTGATCATAGCCGCTGCATCAGGACTGTGTATCTAGCTTCGCGACTGTAA
CTTCACTAGCGTGTAC
FMO05115.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3662-RD | 1731 | CG3662-RD | 263..1205 | 37..972 | 4485 | 98.8 | Plus |
| CG3662-RC | 1570 | CG3662-RC | 130..1072 | 37..972 | 4485 | 98.8 | Plus |
| CG3662-RA | 1651 | CG3662-RA | 130..1072 | 37..972 | 4485 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 822858..823569 | 146..855 | 3460 | 99.7 | Plus |
| 2L | 23513712 | 2L | 821551..821659 | 37..145 | 545 | 100 | Plus |
| 2L | 23513712 | 2L | 823638..823740 | 858..958 | 405 | 95.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:53:42 has no hits.
FMO05115.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:16 Download gff for
FMO05115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3662-RA | 126..1077 | 30..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:13 Download gff for
FMO05115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3662-RA | 130..1081 | 30..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:28 Download gff for
FMO05115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3662-RA | 126..1077 | 30..976 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:28 Download gff for
FMO05115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 821547..821659 | 30..145 | 97 | -> | Plus |
| 2L | 822858..823569 | 146..855 | 99 | -> | Plus |
| 2L | 823637..823763 | 856..976 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:16 Download gff for
FMO05115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 821547..821659 | 30..145 | 97 | -> | Plus |
| arm_2L | 822858..823569 | 146..855 | 99 | -> | Plus |
| arm_2L | 823637..823763 | 856..976 | 92 | == | Plus |
