FMO05116.5prime Sequence
815 bp (815 high quality bases) assembled on 2008-08-22
> FMO05116.5prime
AGCATAATTAAACAAAGTTATCAGTCGACATGGCACAATTCACACTCTAC
AACAAACACAGTGCGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGA
ACACGTACCGCTGTGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGC
CCGACGATCTGACGGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATC
GACTATCCACTATCATGGTATGAGGATATTACCTCAAGCACGCGCTTCTT
TGCGCTGGCAGCTGTATATAATCTGGCCATAATTGGTTTAATCGTTGCCG
AAATCAAACCCTATCGAAATGTGAACAAGGAGGACAAGGGCATCCTGCCG
GACTCGATGGGTCGTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGT
CCATCGTTCGCATCGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGC
TAATGAACCACCTGACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTC
CTGCACACGCTGACCACCAATCAACCTGCCATATTTTTCTACGAGAAGAG
AAGATTTACGCTTCACTCATTCCTGCCCTACTACTACAATATACGGGGCA
AGGGCAAGGACGGATTCACCTATGTGAACTACATTAACGGCGGCCATCCA
CCCTGGACTTTATTAGATCACATCAAGCACTACGCGTCGATGGTGCGCCA
CACCAGCAGCCTTTGCGCCTGGCTGGCCGGGACGAGTCCAGCAGGTGGTG
CGGTGGTTCTACCACAAGCTGCTCACTCGCTTCAACTTTATCGAAGGCAG
CTTTTCTAGACCATT
FMO05116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Naa60-RB | 2231 | CG18177-RB | 659..1422 | 30..794 | 3800 | 99.9 | Plus |
| Naa60-RC | 1378 | CG18177-RC | 659..1298 | 30..669 | 3185 | 99.8 | Plus |
| Naa60-RA | 2294 | CG18177-RA | 1023..1485 | 331..794 | 2295 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9728211..9728433 | 331..553 | 1115 | 100 | Plus |
| 3L | 28110227 | 3L | 9727983..9728150 | 166..333 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 9727787..9727909 | 47..169 | 615 | 100 | Plus |
| 3L | 28110227 | 3L | 9728713..9728841 | 665..794 | 600 | 99.2 | Plus |
| 3L | 28110227 | 3L | 9728502..9728619 | 552..669 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:43 has no hits.
FMO05116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:35 Download gff for
FMO05116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Naa60-RB | 652..1430 | 22..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:15 Download gff for
FMO05116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18177-RB | 617..1395 | 22..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:38 Download gff for
FMO05116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Naa60-RB | 652..1430 | 22..802 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:38 Download gff for
FMO05116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9728213..9728433 | 333..553 | 100 | -> | Plus |
| 3L | 9728504..9728616 | 554..666 | 99 | -> | Plus |
| 3L | 9728715..9728849 | 667..802 | 96 | | Plus |
| 3L | 9727787..9727907 | 47..167 | 100 | -> | Plus |
| 3L | 9727985..9728149 | 168..332 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:35 Download gff for
FMO05116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9720887..9721007 | 47..167 | 100 | -> | Plus |
| arm_3L | 9721085..9721249 | 168..332 | 100 | -> | Plus |
| arm_3L | 9721313..9721533 | 333..553 | 100 | -> | Plus |
| arm_3L | 9721604..9721716 | 554..666 | 99 | -> | Plus |
| arm_3L | 9721815..9721949 | 667..802 | 96 | | Plus |
