FMO05118.5prime Sequence
1007 bp (956 high quality bases) assembled on 2008-08-22
> FMO05118.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGGCCGAGAACAAGCAAG
TGGATACAGAAATAAACGGCGAGGATTTCACCAAGGACGTGACTGCCGAC
GGTCCGGGATCTGAAAATGGTGATGCGGGCGCCGCCGGCTCGACCAACGG
CAGTTCGGACAACCAATCGGCCGCATCCGGCCAGCGGGACGACGACAGGA
AACTGTTTGTCGGTGGTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGC
GATCACTTCGGCAAATATGGCGAGATCGAGAGCATCAATGTCAAGACAGA
TCCCCAGACCGGTCGGTCCCGAGGATTCGCCTTCATCGTGTTTACAAACA
CCGAGGCCATTGACAAAGTCAGCGCCGCGGATGAGCACATAATCAACAGC
AAGAAGGTCGATCCCAAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGT
CGGCGGCCTCACCACAGAGATCAGCGATGAGGAGATTAAGACCTACTTTG
GACAGTTCGGCAATATCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAG
TCGCAGCGCAAAGGATCCTGCTTCATCACCTTCGATTCGGAGCAGGTGGT
GACAGATTTGCTGAAGACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCG
ATGTTAAGCGTGCGACGCCCAAGCCGGAGAACCAGATGATGGGCGGTATG
CGTGGTGGACCACGCGGTGGTATGCGCGGCGGACGCGGTGGCTACGGAGG
ACGAGGTGGCTACAACAACCAGTGGGACGGACAGGGATCATACGGCGGCT
ATGGCGGCGGCTACGGCGGATATGGTGCCGGTGGTTATGGCGACTACTAT
GCCGGCGGCTACTATTAATGGATATGACTACGGTTATGGCGGTGGCGGTT
TTTACGGTGGCAAGCACCGCGGAGGCTGGTGGACGCCAGCAGCCGTCATC
AGCCCTTCGCAAGCTTTTCTAGACCATTTCGTTTGGCGCCGCGAGCCCAT
GTAAGTC
FMO05118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-RC | 2239 | CG16901-RC | 111..1032 | 32..956 | 4490 | 99.2 | Plus |
| sqd-RE | 2844 | CG16901-RE | 386..1307 | 32..956 | 4490 | 99.2 | Plus |
| sqd-RA | 5551 | CG16901-RA | 115..971 | 32..889 | 4250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13642829..13643103 | 514..240 | 1375 | 100 | Minus |
| 3R | 32079331 | 3R | 13642511..13642755 | 759..515 | 1210 | 99.6 | Minus |
| 3R | 32079331 | 3R | 13645752..13645919 | 199..32 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 13642298..13642428 | 889..758 | 610 | 99.2 | Minus |
| 3R | 32079331 | 3R | 13643169..13643212 | 239..196 | 220 | 100 | Minus |
| 3R | 32079331 | 3R | 13636472..13636526 | 943..888 | 200 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:30 has no hits.
FMO05118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:44 Download gff for
FMO05118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RE | 378..1312 | 24..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:17 Download gff for
FMO05118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RC | 378..1312 | 24..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:13 Download gff for
FMO05118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RE | 378..1312 | 24..962 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:13 Download gff for
FMO05118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13642299..13642427 | 759..888 | 99 | <- | Minus |
| 3R | 13642512..13642755 | 515..758 | 99 | <- | Minus |
| 3R | 13642829..13643103 | 240..514 | 100 | <- | Minus |
| 3R | 13643169..13643209 | 199..239 | 100 | <- | Minus |
| 3R | 13645753..13645925 | 24..198 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:44 Download gff for
FMO05118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9468021..9468149 | 759..888 | 99 | <- | Minus |
| arm_3R | 9468234..9468477 | 515..758 | 99 | <- | Minus |
| arm_3R | 9468551..9468825 | 240..514 | 100 | <- | Minus |
| arm_3R | 9468891..9468931 | 199..239 | 100 | <- | Minus |
| arm_3R | 9471475..9471647 | 24..198 | 97 | | Minus |
