FMO05119.5prime Sequence
1281 bp (941 high quality bases) assembled on 2008-08-22
> FMO05119.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAGACAATA
ACACGAGCAGCAGTGCGGGCGGTGCGTCCATCAAACACGAGGATCCATCG
GTGACACTCACAATAAGGCTGATTATGCAAGGAAAGGAGGTTGGTAGTAT
TATTGGTAAAAAGGGTGAAATTGTCAACAGATTTCGTGAAGAGTCTGGTG
CCAAAATCAACATTTCGGATGGCTCATGCCCGGAACGTATTGTGACTGTG
TCTGGTACAACTAATGCAATCTTTTCGGCATTCACGCTCATTACAAAGAA
GTTCGAAGAGTGGTGCTCGCAGTTCAATGATGTAGGCAAAGTTGGTAAAA
CTCAAATACCCATTCAATTGATTGTGCCCGCCAGTCAATGTGGATCGTTA
ATTGGCAAGAGTGGTTCAAAGATCAAGGAAATTCGTCAGACCACGGGCTG
CTCCATCCAAGTGGCCAGTGAAATGCTACCCAATTCCACAGAGCGGGCGG
TTACCTTGAGCGGCAGCGCCGAGCAGATCACCCAGTGCATCTATCAGATA
TGTCTTGTCATGTTGGAGTCCCCGCCACGCGGTGCCACCATCCCGTACCG
ACCAAAACCACAGGTTACTGGCCCCGTCATCCTGGCCAATGGACAGGCTT
TCACCATCCAAGGAAACTACGCGGTGCCCACACAAGAGGTGGCCAAGAAC
CCGCTGGCCAGTCTGGCCGCCTTGGGCCTGGCTGGGATGAATCCGGCCAG
CACTGGGGGCATCAACCACACAGCAGCCTTGGCTGCACTGGCCGGGTCGC
AACTGCGTACAGCGAATCCCGCGAACCGAGCCCAGCAACAGCACACGAGA
TGACCGTCTCAAACGACCTGATTGGCTGCATCATCGGCAAGGGTGGACCA
AGATCGCCGAGATTCGCCAAATATTCCGGCGCCATGATTCCGGATCTGAA
CTGCGAGAGCGCGAAGGCAGCAATACCGACCGCACCATCACATCAGCGGC
AATCAGGCTTCGGGGCCCTGGCCCATTACTTAATTATATGAAAAATCATT
TGAGACTGCTGGTCTGCCATACTTGGTATTCACTACATTGCCCCATGCAA
GGGTAAAAACACACCATTACCCCAGCCTTCTTAACATTCTTTTGGGGCCG
CGGGCCCAGTTAATGGCCTAAACCAAATCCTAATGTGATCTAAACCACAT
ATGCTAGGAATTCTTGGCAGTAATTGGCTTGGATACTCCACAAATAAAAA
CTCCCGCGCGGATAACCGAGCACTTTGTACA
FMO05119.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RC | 9374 | CG7437-RC | 841..1930 | 37..1118 | 4845 | 97.1 | Plus |
| mub-RL | 2968 | CG7437-RL | 900..2001 | 37..1118 | 4715 | 96 | Plus |
| mub-RD | 11975 | CG7437-RD | 841..1850 | 37..1041 | 4700 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21921051..21921320 | 771..1036 | 840 | 94.1 | Plus |
| 3L | 28110227 | 3L | 21915260..21915424 | 404..568 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 21915534..21915657 | 567..690 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 21914891..21915009 | 192..310 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 21907821..21907921 | 37..137 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 21915100..21915200 | 309..409 | 475 | 98 | Plus |
| 3L | 28110227 | 3L | 21920901..21920987 | 687..773 | 435 | 100 | Plus |
| 3L | 28110227 | 3L | 21914774..21914832 | 135..193 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:46 has no hits.
FMO05119.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:46 Download gff for
FMO05119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 841..1925 | 37..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:35 Download gff for
FMO05119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 808..1892 | 37..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:43 Download gff for
FMO05119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 841..1925 | 37..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:43 Download gff for
FMO05119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21907821..21907920 | 37..136 | 100 | -> | Plus |
| 3L | 21914776..21914832 | 137..193 | 100 | -> | Plus |
| 3L | 21914893..21915009 | 194..310 | 100 | -> | Plus |
| 3L | 21915102..21915195 | 311..404 | 98 | -> | Plus |
| 3L | 21915261..21915424 | 405..568 | 100 | -> | Plus |
| 3L | 21915536..21915655 | 569..688 | 100 | -> | Plus |
| 3L | 21920903..21920987 | 689..773 | 100 | -> | Plus |
| 3L | 21921054..21921327 | 774..1041 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:46 Download gff for
FMO05119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21914154..21914427 | 774..1041 | 93 | -> | Plus |
| arm_3L | 21900921..21901020 | 37..136 | 100 | -> | Plus |
| arm_3L | 21907876..21907932 | 137..193 | 100 | -> | Plus |
| arm_3L | 21907993..21908109 | 194..310 | 100 | -> | Plus |
| arm_3L | 21908202..21908295 | 311..404 | 98 | -> | Plus |
| arm_3L | 21908361..21908524 | 405..568 | 100 | -> | Plus |
| arm_3L | 21908636..21908755 | 569..688 | 100 | -> | Plus |
| arm_3L | 21914003..21914087 | 689..773 | 100 | -> | Plus |
