FMO05120.5prime Sequence
1027 bp (959 high quality bases) assembled on 2008-08-22
> FMO05120.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCTTTACCCGC
CAACTGTCCGAGATGAGTGCCAGCGAGCTGAACGATGCCATCGACGACAC
CAACTTCCCGCAGGCCCACATCCTTTCGCGCGGACGCAACAACAGCGTCT
GCTCAACAAGTAGCACCTCGGGCACCTCCTCGCTGGCGGACAGGCAGCAG
AACCAGGCGGAGGAGGCCACTGCCATTGCGGGCACACCCGTCGAGGAGGT
GGCGCCAGCTCCTGCTCTCGTCCCGTTGGCCGGCAACCAGAGACCCCGCC
TCATCCTGAAGACCAACGGCAGCAGTCCGGATAGTGATGGTACACAACCG
AAAACACCACTGACACCGCGTACATCGACAACGCCAGGCCACGAGAAGTG
CACGTTCCACCACGACCTGGAGCTGGACCACAAGCCGCCGACGCGAGAGG
CCCTCCTTCCGGACATGGCACGCTCGTATCGTCTACTCTTGGGCGGCCTG
GGCGAGAATCCCGATCGCCAGGGACTGATCAAGACGCCGGAGCGGGCAGC
CAAGGCCATGCTGTACTTCACCAAGGGCTACGACCAGAGTCTCGAGGATG
TTCTCAATGGCGCCGTTTTCGACGAGGATCATGACGAAATGGTGGTGGTC
AAGGATATTGAAATGTTCTCCATGTGCGAGCATCATCTGGTGCCCTTCTA
CGGCAAAGTTTCCATCGGTTTATTTGCCGTGCAACAAGATTCTCGGACTC
AGTAAATTGGCACGCATTGTCGAAATATTTTCGCGTCGCCTGCAAGTCCA
GGAGCGCTTAACTAAGCAGATCGCAGTGGCCGTGACTCAGGCCGTGCACC
CGCTGGAGTAGCAGTGGTCGTAGAGGGAGTCCACATGTGCTTGGTGATGC
GTGGCGTGCAGAAAATCAACAGCAAAACTGTTACCTCAACTATGCTGGGC
GTGTTCCGAAGACGATCCCAAGACCCGGTGAAGGAATTTCTGAACTTAGT
CAATAGCAAAGCAGCTTTCTAGACCAT
FMO05120.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RA | 1793 | CG9441-RA | 175..1147 | 35..1010 | 4715 | 99.2 | Plus |
Pu-RC | 1744 | CG9441-RC | 478..1098 | 387..1010 | 2955 | 98.7 | Plus |
Pu-RB | 1625 | CG9441-RB | 359..979 | 387..1010 | 2955 | 98.7 | Plus |
Pu-RC | 1744 | CG9441-RC | 174..479 | 35..340 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21179292..21179645 | 35..388 | 1770 | 100 | Plus |
2R | 25286936 | 2R | 21179935..21180147 | 385..597 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 21181419..21181585 | 597..764 | 790 | 99.4 | Plus |
2R | 25286936 | 2R | 21181644..21181761 | 764..880 | 540 | 99.2 | Plus |
2R | 25286936 | 2R | 21181836..21181962 | 881..1010 | 460 | 93.8 | Plus |
Blast to na_te.dros performed 2014-11-28 22:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 2713..2743 | 995..1025 | 110 | 83.9 | Plus |
FMO05120.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:12 Download gff for
FMO05120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 169..1150 | 28..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:20 Download gff for
FMO05120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 168..1149 | 28..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:46 Download gff for
FMO05120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 169..1150 | 28..1014 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:46 Download gff for
FMO05120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21179280..21179644 | 24..387 | 98 | -> | Plus |
2R | 21179938..21180147 | 388..597 | 100 | -> | Plus |
2R | 21181420..21181585 | 598..764 | 99 | -> | Plus |
2R | 21181645..21181761 | 765..880 | 99 | -> | Plus |
2R | 21181836..21181965 | 881..1014 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:12 Download gff for
FMO05120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17069150..17069266 | 765..880 | 99 | -> | Plus |
arm_2R | 17069341..17069470 | 881..1014 | 94 | | Plus |
arm_2R | 17066785..17067149 | 24..387 | 98 | -> | Plus |
arm_2R | 17067443..17067652 | 388..597 | 100 | -> | Plus |
arm_2R | 17068925..17069090 | 598..764 | 99 | -> | Plus |