Clone FMO05120 Report

Search the DGRC for FMO05120

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:51
Well:20
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPu-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05120.5prime Sequence

1027 bp (959 high quality bases) assembled on 2008-08-22

> FMO05120.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCTTTACCCGC
CAACTGTCCGAGATGAGTGCCAGCGAGCTGAACGATGCCATCGACGACAC
CAACTTCCCGCAGGCCCACATCCTTTCGCGCGGACGCAACAACAGCGTCT
GCTCAACAAGTAGCACCTCGGGCACCTCCTCGCTGGCGGACAGGCAGCAG
AACCAGGCGGAGGAGGCCACTGCCATTGCGGGCACACCCGTCGAGGAGGT
GGCGCCAGCTCCTGCTCTCGTCCCGTTGGCCGGCAACCAGAGACCCCGCC
TCATCCTGAAGACCAACGGCAGCAGTCCGGATAGTGATGGTACACAACCG
AAAACACCACTGACACCGCGTACATCGACAACGCCAGGCCACGAGAAGTG
CACGTTCCACCACGACCTGGAGCTGGACCACAAGCCGCCGACGCGAGAGG
CCCTCCTTCCGGACATGGCACGCTCGTATCGTCTACTCTTGGGCGGCCTG
GGCGAGAATCCCGATCGCCAGGGACTGATCAAGACGCCGGAGCGGGCAGC
CAAGGCCATGCTGTACTTCACCAAGGGCTACGACCAGAGTCTCGAGGATG
TTCTCAATGGCGCCGTTTTCGACGAGGATCATGACGAAATGGTGGTGGTC
AAGGATATTGAAATGTTCTCCATGTGCGAGCATCATCTGGTGCCCTTCTA
CGGCAAAGTTTCCATCGGTTTATTTGCCGTGCAACAAGATTCTCGGACTC
AGTAAATTGGCACGCATTGTCGAAATATTTTCGCGTCGCCTGCAAGTCCA
GGAGCGCTTAACTAAGCAGATCGCAGTGGCCGTGACTCAGGCCGTGCACC
CGCTGGAGTAGCAGTGGTCGTAGAGGGAGTCCACATGTGCTTGGTGATGC
GTGGCGTGCAGAAAATCAACAGCAAAACTGTTACCTCAACTATGCTGGGC
GTGTTCCGAAGACGATCCCAAGACCCGGTGAAGGAATTTCTGAACTTAGT
CAATAGCAAAGCAGCTTTCTAGACCAT

FMO05120.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-RA 1793 CG9441-RA 175..1147 35..1010 4715 99.2 Plus
Pu-RC 1744 CG9441-RC 478..1098 387..1010 2955 98.7 Plus
Pu-RB 1625 CG9441-RB 359..979 387..1010 2955 98.7 Plus
Pu-RC 1744 CG9441-RC 174..479 35..340 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21179292..21179645 35..388 1770 100 Plus
2R 25286936 2R 21179935..21180147 385..597 1065 100 Plus
2R 25286936 2R 21181419..21181585 597..764 790 99.4 Plus
2R 25286936 2R 21181644..21181761 764..880 540 99.2 Plus
2R 25286936 2R 21181836..21181962 881..1010 460 93.8 Plus
Blast to na_te.dros performed 2014-11-28 22:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 2713..2743 995..1025 110 83.9 Plus

FMO05120.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:12 Download gff for FMO05120.5prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 169..1150 28..1014 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:20 Download gff for FMO05120.5prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 168..1149 28..1014 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:46 Download gff for FMO05120.5prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 169..1150 28..1014 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:46 Download gff for FMO05120.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21179280..21179644 24..387 98 -> Plus
2R 21179938..21180147 388..597 100 -> Plus
2R 21181420..21181585 598..764 99 -> Plus
2R 21181645..21181761 765..880 99 -> Plus
2R 21181836..21181965 881..1014 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:12 Download gff for FMO05120.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17069150..17069266 765..880 99 -> Plus
arm_2R 17069341..17069470 881..1014 94   Plus
arm_2R 17066785..17067149 24..387 98 -> Plus
arm_2R 17067443..17067652 388..597 100 -> Plus
arm_2R 17068925..17069090 598..764 99 -> Plus