FMO05121.5prime Sequence
1210 bp (985 high quality bases) assembled on 2008-08-22
> FMO05121.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACACGGACGA
CAACTCAAGTGGCACTATTACCGGCAGTGATCTTGGCCAGCGTTATCGGC
ATGCAGGCGACTTAACTGGCGAAGCCCCAACCAGACCCCGTGCAAACATA
TGGTGCTCTAAAAAATACTTCGCCGAGATCAGCATTACGGTTCCATGGGG
GCACATATCCGGCAAGTGGTACGGTCCGCAGAACGTCCAACCAATTTTAG
GACTGCACGGGTGGCAGGATAATGCGGGAACCTTTGATCGCCTGATGCCG
CTGCTGTCGCCGGACGTGGCATTCCTCGCGATCGATCTTCCTGGTCACGG
GCTATCGTCCCGACTGCCTGATGGCTGCTACTACAACTCCGTGGATAATC
TGTATGTGATCCGCCTGATCATGAAGCAGTACAAGTGGGAGAAAGTGTCC
CTGGTTGGACACTCAATGTCGTCCATTATTTGCTTTGTTTTCGCCGCGGT
CTTTCCGGACAAGGTGGACATGATCATTGGGATTGATGCCCTGAAACCTC
ATCAGCGTCCGTATCCGTCGGTTATTAGGACCATGGAAACCCGTTTGGAC
GAGTTCTTGCGTGAAGACGAAAGGAACCGGAGTAAGAACGAGCCGCCGAG
CTACACCTACGATGAACTTATTGAGAGGGTCTATATCGGCACCTTCCATT
CGGTGAACAAGGAGCACTGCAAGCATTTAATGGCTCGCAACATCGGCAAG
TCGGAGAAGTACCCGGGACAATTACTTCTTCTGCCGCGATAGGCGTCTCA
AGTTTTACAACTATGCCATCGGGTCCCAGGAGCTGTGTGTGGAAATGGCC
AATCGGATTACATGTCCTTACTTGTTCATCAAGGCGCCCAGTCCTCGTAT
TTCGAGGACAGAAGTACTACGACGAAGGTGCTGGATGTGCTGTGAAGAAT
GCGAACTTTGAGTACTGAGTAATGCTCGCACCATGTGCCATGACGATCAG
AGCATCATTGCACGTCAACAACTTTATCAGCGCTCGACCGCGAGGGCTGC
ATCCGCGAAGCCAAGAGCCAGGAAGCAGCTGCACTTCTAGACATCGATGG
CGCGGTCAGTAGGCCAAATCAATCATCCTACCTAATCCAAGGCCTAGAGA
TCGGCTGTATGCTTGAATTCCAAAAGCGGTGGTACACTCTGACAATCCAA
GGTGATTCTG
FMO05121.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11309-RA | 1664 | CG11309-RA | 259..1270 | 37..1034 | 4605 | 97.9 | Plus |
| CG11309-RF | 2125 | CG11309-RF | 360..1240 | 168..1034 | 3950 | 97.6 | Plus |
| CG11309-RE | 1206 | CG11309-RE | 136..1016 | 168..1034 | 3950 | 97.6 | Plus |
| CG11309-RF | 2125 | CG11309-RF | 259..360 | 37..138 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21302752..21303549 | 965..169 | 3705 | 99 | Minus |
| 3L | 28110227 | 3L | 21303910..21304011 | 138..37 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 21305088..21305198 | 178..288 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:10 has no hits.
FMO05121.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:06 Download gff for
FMO05121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11309-RA | 256..1282 | 34..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:21 Download gff for
FMO05121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11309-RA | 251..1277 | 34..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:57 Download gff for
FMO05121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11309-RA | 256..1282 | 34..1045 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:57 Download gff for
FMO05121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21302658..21303549 | 169..1045 | 97 | <- | Minus |
| 3L | 21303808..21303837 | 139..168 | 100 | <- | Minus |
| 3L | 21303910..21304014 | 34..138 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:06 Download gff for
FMO05121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21295758..21296649 | 169..1045 | 97 | <- | Minus |
| arm_3L | 21296908..21296937 | 139..168 | 100 | <- | Minus |
| arm_3L | 21297010..21297114 | 34..138 | 99 | | Minus |
