FMO05122.5prime Sequence
1178 bp (969 high quality bases) assembled on 2008-08-22
> FMO05122.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGACCTCCATTCTG
GACATGAAGGCCGGTCCGCCCGACTACTGGGCGGAGATCAGCAACTTCTT
TCTGCCGCTGAAATACCTGATCACCAACGACCGCTTCGATTCGATGGTGC
GGGACATAGACCTCTATTACCTGATCAACGGGGTCTTTTGGATATTCGTG
GCGTTGTCTTGCGGCTACTACGCCTTCCAGCGGCTCTTCCAGTTCTTTCT
GAAGTCGTCGAGCATGAAGCACTTTCAGCGGAGGCTGTTCGCCCGCGTCA
TTTGGAACATCGCCTTCTATGCGGCCAGCTGCCTGTTCCTGCACTTCTAC
AACGAGTTCATGATCCTGCCGCAGCTGATGAAGAACCAAGGACGCTACTC
GCTCTTCTACTCCTCGGAGAACCTGATCTTCTATCGATCTCATCAGGCGG
AAAAGTTTCAGTTCTACTCGATCTTCATTATCACGTTCTACCTGCATGGG
GCGTGGTTGGACTTCAAGGACGCTGACTTCCTGGAGGTGGGCTCCAAGGG
ACTCTACCTGCTGTCCCTCGTCGCCATCGATGTTTACAGGTACGAAAACT
ACTTTGTGGGCCTGAATCTAACGGTGGGTCTGTACAGCATACTCACCGAG
GTGCTAGCCCTGTTGGTCCTGCCCAGCACCAATTCACACCGGATCATCTA
CCATGTTTTCCTCGGTCTGCGCATCATGGTGTGGGCGTATGTGTTTGTCA
ACCTACTGCTCTTTAAGTACTTCATACCCACGCTGTTCGCCAAGAACTTT
AAGCTTTCCCTGAATGTGCCCATTTGGGTTGTGGTACGGCCTCTCCATTT
GGGACTCGCCGGTGCTGCATACTTCTACATCAGATATATCACACAGCGCC
GTCGGATTGTCGGGCGAGGATCGGCGCTAGTGCATCTGTCAGACTCATGA
GTTCGCACTACAGACACTGAGAGCTATTTGAGTAAGCTGCACACATAGAC
CACGTCATCGCTGCTCGACAGTCGCCGCAACTTCAGCTATTGCTTCTGAT
GCTAAGCCATGAACGATCGCAGACTGCTGACCGAGATGAACATGACTGCC
ATGATCGAGCTTCTAACATGTGGCGTCCAGTAGTCCTACCTACTACTACT
ATCCATGGCCTAGGAATCGGCATGACTG
FMO05122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1636-RC | 1343 | CG1636-RC | 136..1042 | 35..936 | 4320 | 98.9 | Plus |
| CG1636-RA | 2124 | CG1636-RA | 136..1042 | 35..936 | 4320 | 98.9 | Plus |
| CG1636-RB | 2325 | CG1636-RB | 136..690 | 35..589 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8274277..8274627 | 240..590 | 1755 | 100 | Plus |
| X | 23542271 | X | 8274707..8275030 | 588..910 | 1430 | 98.2 | Plus |
| X | 23542271 | X | 8273547..8273754 | 35..242 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:58:36 has no hits.
FMO05122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:05 Download gff for
FMO05122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1636-RA | 131..1049 | 29..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:09 Download gff for
FMO05122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1636-RA | 126..1044 | 29..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:35 Download gff for
FMO05122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1636-RA | 131..1049 | 29..941 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:35 Download gff for
FMO05122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8273542..8273754 | 29..242 | 98 | -> | Plus |
| X | 8274280..8274626 | 243..589 | 100 | -> | Plus |
| X | 8274709..8275067 | 590..941 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:05 Download gff for
FMO05122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8167575..8167787 | 29..242 | 98 | -> | Plus |
| arm_X | 8168313..8168659 | 243..589 | 100 | -> | Plus |
| arm_X | 8168742..8169100 | 590..941 | 96 | == | Plus |
