FMO05125.5prime Sequence
396 bp (396 high quality bases) assembled on 2008-08-22
> FMO05125.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGGCCTTTGACGCGATACC
CAAGGATCTGCGAGGACTTCGCGCCTGCCTCGTTTGCTCCCTAGTGAAGA
GTTTTGATCAATTTGAGACTGATGGCTGTGAAAACTGCGAGGAGTTCCTG
CGAATGAAAAACAACAAGGACAATGTCTATGATCACACTAGCAACAACTT
TGACGGAATTATTGCCCTAACTACGCCCACCGACTCCTGGGTGGCCAAGT
GGCAAAGATTGTCCCGCTTTACTCGTGGTATCTATGCCATTTCTGTATCC
GGAACACTGCCGCAGTCTACCTTACGTGACATGAAGAATCGTGGAATTGT
CTACAAATCTCGGGACAGAAGTCAACGAGCAAGCTTTCTAGACCAT
FMO05125.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spt4-RA | 457 | CG12372-RA | 89..436 | 31..378 | 1740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12633805..12633969 | 98..262 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 12634036..12634151 | 263..378 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 12633677..12633745 | 31..99 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:31 has no hits.
FMO05125.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:11 Download gff for
FMO05125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spt4-RA | 79..439 | 21..382 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:26 Download gff for
FMO05125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spt4-RA | 51..411 | 21..382 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:05 Download gff for
FMO05125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spt4-RA | 79..439 | 21..382 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:05 Download gff for
FMO05125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12633667..12633745 | 21..99 | 94 | -> | Plus |
| 2R | 12633807..12633969 | 100..262 | 100 | -> | Plus |
| 2R | 12634036..12634154 | 263..382 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:11 Download gff for
FMO05125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8521541..8521659 | 263..382 | 98 | | Plus |
| arm_2R | 8521312..8521474 | 100..262 | 100 | -> | Plus |
| arm_2R | 8521172..8521250 | 21..99 | 94 | -> | Plus |
