FMO05126.5prime Sequence
911 bp (903 high quality bases) assembled on 2008-08-22
> FMO05126.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGTCATCGGCTATATA
CCTAGAGAACTATTTAGACGGATTGGAAAGTCTGCCAACGGAGCTGGAGA
GAAATTTTAAGCTGATGCGAAAATTAGACGATCGAGCACAAACAGCGATG
AAGAGCATCGATAGCCATGCCAAGGACTTTATGCGCAAGCTGGGCGAGAA
CGGGGCCATGAGCGAGGATGAGAGGAGGGAGCGCCAGGAGGATATCAAGG
CACTGTTCGGAAAGGCCAAGGAGTACAGCGACGACAAGGTGCAGCTGGCC
ATTCAGACCTACGAACTAGTGGACAAGCAGATACGGCGACTGGACAACGA
TTTAGCACGCTTCGAGGGTGAGATTCAGGAGAAGGCCTCATCCACGCGTG
CCAAATCCGAGGAAGTGGTGGCCAAGAAAGGTCGCAAAAAAACCAAGGAC
AGCAAGACGACGGGCAAAAAGAAAAAGTCCGCATCCTCGGATGAGGAAAC
TGGGCGCGGCAACAACCAATCTAACGCCAATTCCAGTGTCAATTCGAGCA
GCAATGCCGGGCAAGGTAGCAAAAAGAAAAAGTCCAAGGTAAATCAAGAA
AAAGAAACTCGCAAGGGGGGCGCTCAAAAGAAAACCGTCGAGGTTGATGA
CTCTGAGAAGGAATCGTGCCACACGGCCGCCACTCATCCCAGCGACGTTA
TGGACATGCCCGTCGATCCCAATGAGCCCCACATATTGCCTATGCCACCA
GGTGTCCTATGGAGAGATGATTGGCTGCGACAATCCCGACTGTCCCATCG
AGTGGTTTCACTTCGCTTGTGTTGGCCTCACCACAAAGCCAAAGGGCAAG
TGGTTCTGTTCCCAGTGTTACGCAGGACAGAAAGAAGAAAGCAAGCTTTC
TAGACCATTTC
FMO05126.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9293-RA | 1044 | CG9293-RA | 100..954 | 34..890 | 4205 | 99.5 | Plus |
| CG9293-RB | 1002 | CG9293-RB | 100..654 | 34..588 | 2775 | 100 | Plus |
| CG9293-RB | 1002 | CG9293-RB | 652..912 | 628..890 | 1235 | 98.5 | Plus |
| Ing3-RA | 2298 | CG6632-RA | 1997..2140 | 714..858 | 190 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13386757..13387114 | 427..70 | 1790 | 100 | Minus |
| 2L | 23513712 | 2L | 13386488..13386690 | 630..428 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 13386099..13386259 | 790..629 | 760 | 99.4 | Minus |
| 2L | 23513712 | 2L | 13385938..13386036 | 890..791 | 420 | 97 | Minus |
| 2L | 23513712 | 2L | 13387176..13387213 | 71..34 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:54 has no hits.
FMO05126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:53 Download gff for
FMO05126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RA | 92..954 | 26..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:27 Download gff for
FMO05126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RA | 79..941 | 26..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:28 Download gff for
FMO05126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RA | 92..954 | 26..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:28 Download gff for
FMO05126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13385938..13386036 | 791..890 | 97 | <- | Minus |
| 2L | 13386099..13386257 | 631..790 | 99 | <- | Minus |
| 2L | 13386488..13386690 | 428..630 | 100 | <- | Minus |
| 2L | 13386757..13387113 | 71..427 | 100 | <- | Minus |
| 2L | 13387177..13387221 | 26..70 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:53 Download gff for
FMO05126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13385938..13386036 | 791..890 | 97 | <- | Minus |
| arm_2L | 13386099..13386257 | 631..790 | 99 | <- | Minus |
| arm_2L | 13386488..13386690 | 428..630 | 100 | <- | Minus |
| arm_2L | 13386757..13387113 | 71..427 | 100 | <- | Minus |
| arm_2L | 13387177..13387221 | 26..70 | 91 | | Minus |
