FMO05127.5prime Sequence
881 bp (881 high quality bases) assembled on 2008-08-22
> FMO05127.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCACAATTCAC
ACTCTACAACAAACACAGTGCGCCGCCCAGTAGCGAGAGTACGCGTGTGG
ACTGCGAACACGTACCGCTGTGCTCGATTAACGATGTGCAGCTAAGGTTC
CTGGTGCCCGACGATCTGACGGAGGTGCGACAGCTGTGCCAAGAATGGTT
TCCAATCGACTATCCACTATCATGGTATGAGGATATTACCTCAAGCACGC
GCTTCTTTGCGCTGGCAGCTGTATATAATCTGGCCATAATTGGTTTAATC
GTTGCCGAAATCAAACCCTATCGAAATGTGAACAAGGAGGTAATAGCCAA
TATGAGTGATAGTGATGAGTTGTACACCAGGCTGAGCGGTTTTCCCATGC
AGGACAAGGGCATCCTGCCGGACTCGATGGGTCGTTCCGCCGATGTCGGT
TATATACTGTCGCTGGGCGTCCATCGTTCGCATCGACGCAATGGCATCGG
ATCGCTGCTGTTGGACGCGCTAATGAACCACCTGACGACGGCCGAGCGGC
ATTCGGTGAAGGCGATCTTCCTGCACACGCTGACCACCAATCAACCTGCC
ATATTTTTCTACGAGAAGAGAAGATTTACGCTTCACTCATTCCTGCCCTA
CTACTACAATATACGGGGCAAGGGCAAGGACGGATTCACCTATGTGAACT
ACATTAACGGCGGCCATCCACCCTGGACTTTATTAGATCACATCAAGCAC
TACGCGTCGATGGTGCGCCACACCAGCAGTCTTTGCGCCTGGCTGGCCGG
ACGAGTCCAGCAGGTGTGCGGTGGTTCTACCACAAGCTGCTCACTCGCTT
CAACTTTATCGAGGCAAGCTTTCTAGACCAT
FMO05127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Naa60-RA | 2294 | CG18177-RA | 659..1486 | 37..863 | 4100 | 99.8 | Plus |
| Naa60-RB | 2231 | CG18177-RB | 960..1423 | 401..863 | 2280 | 99.6 | Plus |
| Naa60-RC | 1378 | CG18177-RC | 960..1298 | 401..739 | 1680 | 99.7 | Plus |
| Naa60-RB | 2231 | CG18177-RB | 659..962 | 37..340 | 1520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9727983..9728433 | 173..623 | 2255 | 100 | Plus |
| 3L | 28110227 | 3L | 9727787..9727909 | 54..176 | 615 | 100 | Plus |
| 3L | 28110227 | 3L | 9728713..9728842 | 735..863 | 585 | 98.5 | Plus |
| 3L | 28110227 | 3L | 9728502..9728619 | 622..739 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:33:00 has no hits.
FMO05127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:46 Download gff for
FMO05127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Naa60-RA | 652..1493 | 29..870 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:29 Download gff for
FMO05127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18177-RA | 617..1458 | 29..870 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:03 Download gff for
FMO05127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Naa60-RA | 652..1493 | 29..870 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:03 Download gff for
FMO05127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9727787..9727907 | 54..174 | 100 | -> | Plus |
| 3L | 9727985..9728433 | 175..623 | 100 | -> | Plus |
| 3L | 9728504..9728616 | 624..736 | 99 | -> | Plus |
| 3L | 9728715..9728849 | 737..870 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:46 Download gff for
FMO05127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9721815..9721949 | 737..870 | 96 | | Plus |
| arm_3L | 9720887..9721007 | 54..174 | 100 | -> | Plus |
| arm_3L | 9721085..9721533 | 175..623 | 100 | -> | Plus |
| arm_3L | 9721604..9721716 | 624..736 | 99 | -> | Plus |
