FMO05129.5prime Sequence
445 bp (445 high quality bases) assembled on 2008-08-22
> FMO05129.5prime
TTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGTTCAAGTTTG
TCATGATCTGCGCAGTTTTGGGCCTGGCGGTGGCCAACCCCCCGGTGCCC
CATTCCCTAGGCCGTTCGGAGGATGTCCACGCCGATGTCCTTTCCCAATC
CGATGATGTTCGTGCCGATGGATTCGATTCCAGCCTGCACACCTCCAACG
GAATCGAGCAGGCCGCCAGCGGTGATGCCCATGGCAACATCCACGGCAAC
TTCGGCTGGATCTCACCCGAGGGCGAGCACGTCGAGGTTAAGTACGTCGC
CAATGAGAACGGATACCAGCCCTCGGGAGCCTGGATCCCCACTCCTCCTC
CAATCCCAGAGGCCATCGCCCGCGCCGTCGCCTGGCTGGAGTCCCACCCA
CCAGCACCCGAGCACCCCCGTCATCACGCAAGCTTTCTAGACCAT
FMO05129.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp1-RB | 1065 | CG11650-RB | 43..432 | 38..427 | 1950 | 100 | Plus |
| Lcp1-RA | 543 | CG11650-RA | 43..432 | 38..427 | 1950 | 100 | Plus |
| Lcp2-RB | 927 | CG8697-RB | 315..630 | 112..427 | 1295 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8430748..8431125 | 427..50 | 1890 | 100 | Minus |
| 2R | 25286936 | 2R | 8434094..8434409 | 427..112 | 1295 | 94 | Minus |
| 2R | 25286936 | 2R | 8433018..8433250 | 357..129 | 270 | 76.4 | Minus |
| 3L | 28110227 | 3L | 10890418..10890523 | 262..367 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:57:06 has no hits.
FMO05129.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:34 Download gff for
FMO05129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 23..421 | 29..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:31 Download gff for
FMO05129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 23..421 | 29..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:48 Download gff for
FMO05129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 34..432 | 29..427 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:48 Download gff for
FMO05129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8430748..8431125 | 50..427 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:34 Download gff for
FMO05129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4318253..4318630 | 50..427 | 100 | <- | Minus |
