FMO05130.5prime Sequence
813 bp (813 high quality bases) assembled on 2008-08-22
> FMO05130.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGAAGTTCCTG
ATCCTGTTGTCGGCTGTAGCCTGCGCCCTGGGAGGCACCATCCCCGAGGG
TCTCCTGCCCCAGTTGGATGGCCGCATTGTCGGCGGTACTGCTACCACCA
TCAGCAGCTTCCCCTGGCAGATCTCCCTGCAGCGCAGTGGCAGCCACTCC
TGCGGTGGATCCATCTACTCCGCCAGGGTGATCGTGACCGCCGCTCACTG
CCTGCAGTCCGTGTCCGCCTCCTCCCTGCAGATCCGCGCCGGATCCAGCT
ACTGGAGCTCTGGTGGCGTCGTCGCCAAGGTTTCCTCTTTCAAGAACCAC
GAGGGTTACAACGCCAACACCATGGTCAACGACATCGCTGTGCTCCATCT
GAGCTCCTCTCTGAGCTTCAGCTCCACCATCAAGGCCATCGGTCTGGCTA
GCTCCAACCCCGCCAACGGTGCTGCTGCCTCCGTCTCCGGATGGGGTACC
GAGTCCTCTGGCTCCAGCTCCATTCCCTCCCAGCTGCGTTATGTCAACGT
GAACATCGTCAGCCAGAGCCGGTGCTCTTCTTCCTCCTATGGCTACGGAA
ACCAGATCAAGAGCTCCATGATCTGCGCTTTTGCCAGCGGCAAGGACTCG
TGCCAGGGTGACTCCGGTGGCCCACTGGTCTCCGGCGGAGTCCTCGTCGG
TGTTGTCTCCTGGGGATACGGATGTGCTGCCGCTAACTACCCCGGTGTCT
ATGCCGATGTTGCTGCCCTCCGCTCCTGGGTGATCAACAACGCCCGCAAG
CTTTCTAGACCAT
FMO05130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTry-RB | 1071 | CG18211-RB | 17..776 | 35..794 | 3800 | 100 | Plus |
| betaTry-RA | 813 | CG18211-RA | 17..776 | 35..794 | 3800 | 100 | Plus |
| CG30025-RA | 810 | CG30025-RA | 14..773 | 35..794 | 2465 | 88.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11346341..11347100 | 35..794 | 3800 | 100 | Plus |
| 2R | 25286936 | 2R | 11353601..11354360 | 794..35 | 2465 | 88.3 | Minus |
| 2R | 25286936 | 2R | 11349097..11349856 | 794..35 | 2405 | 87.8 | Minus |
| 2R | 25286936 | 2R | 11350826..11351585 | 35..794 | 2405 | 87.8 | Plus |
| 2R | 25286936 | 2R | 11355332..11356091 | 35..794 | 2405 | 87.8 | Plus |
| 2R | 25286936 | 2R | 11344346..11345093 | 782..35 | 2390 | 88 | Minus |
| 2R | 25286936 | 2R | 11345694..11346014 | 389..69 | 285 | 72.6 | Minus |
| 2R | 25286936 | 2R | 11345320..11345489 | 763..594 | 280 | 77.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:23 has no hits.
FMO05130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:54 Download gff for
FMO05130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTry-RA | 1..769 | 31..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:33 Download gff for
FMO05130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTry-RA | 1..765 | 34..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:18 Download gff for
FMO05130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTry-RA | 7..779 | 27..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:18 Download gff for
FMO05130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11346331..11347103 | 27..799 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:54 Download gff for
FMO05130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7233836..7234608 | 27..799 | 99 | | Plus |
