FMO05131.5prime Sequence
1241 bp (993 high quality bases) assembled on 2008-08-22
> FMO05131.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGACTGCCGAGACCCT
CAAGCCGTTTATAACGCCAACGAGTGCCAACGATGATGGTTTTCCGGCCA
AAGCGACCAGCACGGCGACCGCCCAGCGACGCACCCGCCAGCTGATCCCC
CTGGTTTTGGGGTTCATCGGTCTGGGGCTGGTCGTTGCCATTCTCGCACT
AACGATCTGGCAGACAACGCGTGTATCGCATCTGGACAAGGAGCTGAAGA
GCCTGAAGCGAGTCGTCGATAATCTCCAGCAGCGTTTGGGCATAAACTAT
CTGGACGAGTTCGACGAGTTCCAAAAGGAGTACGAGAATGCCCTCATCGA
CTATCCAAAAAAGGTGGATGGCCTCACGGATGAGGAGGACGACGACGATG
GCGATGGTCTGGATTCCATTGCGGACGACGAGGACGACGACGTTAGCTAT
AGCTCTGTGGATGATGTTGGCGCAGACTACGAGGACTACACCGATATGTT
AAATAAACTCAACAATGCACATACCGGCACCACGCCCACATCTGAGACCA
CTGCTGAGGGCGAGGGCGAGACGGACAGTGCATCCTCAGCCTCAAATGAT
GACAATGTGTTCGATGACTTTACCAGCTACAATGCCCACAAAAAGAAGCA
GGAGAGAAAATCTCGCTCGATTGCCGATGTACGCAATGAGGAGCAGAATA
TTCAAGGAAATCACACAGAGCTTCAGGAAAAGTCATCCAATGAGGCAACT
TCCAAAGAGAGCCCTGCACCACTTCACCACCGTCGCAGAATGCATTCCCG
CCATCGCCACCTCCTAGTCCGCAAAGCCAGATCCGAGGACTCGAGGCCAG
CAGCCCATTTCCACTTGAGCAGCATGCGCGTCACCAAAGAAGTATGGGCC
TACCATGGAGATTATGTACATAGGAAATGATAACGAGAAGAAACTCTTAT
CAGGACACTTTCAAACGCGCGATGGCGTCTTGACGTGGACCATACAGCCT
AATATACGTATACGCCCAGATATGCTACACCACTCGCACGACAGAACGAT
TATCGTCTTTCAAGAAAACCCTCCATTCTGCATGCTGAACACGTGCCACC
ACATGCCACATAAGTGTAACTGCCAACGAATGTCTGATCCCCTGACGAAC
GAAGATTCCATCTGTAGCTTCCACGATGCATGCATTCGCGGAAGAACACC
CGAGACATCTTGGGCATCTCAGGGTCGACGACTCTTCTCAG
FMO05131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egr-RB | 2148 | CG12919-RB | 647..1781 | 34..1153 | 4890 | 96.8 | Plus |
| egr-RA | 2166 | CG12919-RA | 647..1799 | 34..1153 | 4700 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10082640..10082967 | 329..656 | 1640 | 100 | Plus |
| 2R | 25286936 | 2R | 10079012..10079182 | 34..204 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 10081506..10081632 | 204..330 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 10083028..10083134 | 655..761 | 535 | 100 | Plus |
| 2R | 25286936 | 2R | 10083575..10083758 | 900..1078 | 365 | 89.8 | Plus |
| 2R | 25286936 | 2R | 10083260..10083326 | 760..826 | 335 | 100 | Plus |
| 2R | 25286936 | 2R | 10083420..10083494 | 825..898 | 295 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:01:55 has no hits.
FMO05131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:21 Download gff for
FMO05131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egr-RB | 638..1752 | 25..1125 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:34 Download gff for
FMO05131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egr-RB | 639..1753 | 25..1125 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:40 Download gff for
FMO05131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egr-RB | 638..1752 | 25..1125 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:40 Download gff for
FMO05131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10079007..10079182 | 28..204 | 97 | -> | Plus |
| 2R | 10081507..10081632 | 205..330 | 100 | -> | Plus |
| 2R | 10082642..10082967 | 331..656 | 100 | -> | Plus |
| 2R | 10083030..10083134 | 657..761 | 100 | -> | Plus |
| 2R | 10083262..10083326 | 762..826 | 100 | -> | Plus |
| 2R | 10083422..10083493 | 827..897 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:21 Download gff for
FMO05131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5970927..5970998 | 827..897 | 95 | -> | Plus |
| arm_2R | 5966512..5966687 | 28..204 | 97 | -> | Plus |
| arm_2R | 5969012..5969137 | 205..330 | 100 | -> | Plus |
| arm_2R | 5970147..5970472 | 331..656 | 100 | -> | Plus |
| arm_2R | 5970535..5970639 | 657..761 | 100 | -> | Plus |
| arm_2R | 5970767..5970831 | 762..826 | 100 | -> | Plus |
