FMO05133.5prime Sequence
1040 bp (1040 high quality bases) assembled on 2008-08-22
> FMO05133.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCCTAA
AATTGATGGCGTTTGTCTGTGCTCTGCTGCTCCTGTGCACCTTGACCCAT
GTCCTGTCGGCCGCGACCACAGTGCGTCCCTACAAGTTCGGCTTCACCAT
CGACGAGCAGCAGCATCGGGCAGAGAAGAGAGATGAACGCGGCATTATCA
TGGGCGAGTTTGGGTTCATCACCGCCGATGGTATCTATCACGTGACGGTC
TATGCCACCGACGAGGAGGGCAAATTCCGGATAATCTCCATGAAGAGCTA
TCCTTACGCGGGTCCAGTTGGTTCAAAAAGTGTTCCTGTGACAACGACTC
CAAAGGTCCTGCTTCCTGCAGCTCCGGTGGCTCTGCCCAAGTACAACTTC
AACTCGGAGGCCTGTTCCGGTTGTTTCCTAAAAAAGTCCCCTCCCAAGAC
GGAAATTCGCACACTTTCACAGCCATTGGCTCCAGTTCAACCAGGTAAGC
CCGATGGCTCTTCAGACATCGGCCTGAATGTGCAGTTACCCTTCCGGGAA
TCCATTGCACAGACTGTGGCAAGTCGTCTTGGTTTGCTCCAAGATACACT
GCAAACCTCCAACACAAACACGAACGCACCAAACACTAAAACAATCGAAC
TTGGTCTCAACATAGCAATGAGCACATACTACACAACAAAGAATGCTGTA
ACCGGACATGTGAGCACGCAGACCTCCAATTCGCAAACTCCGAGTGCCAA
CACAAAGATCGACTACAATGTGGGCGTGGTCGAGAAGGCTTCACCGCCGG
TTTATCGGCCATTGAACATCCGGTTGAACGAGGACGTTATGAGACAAGCT
ATTACATATGGAAACACAATACCTGGCCATGTGCCCTTGCCCAATCAGCC
ACTTGTTGAAACCTCATTGCTTCCAGCGAGTCAACACACATCCGAATGCG
GGCCTTATGCAAAGGTTCACTGCAGTACATTCATCCGGCAAGCTTTCTAG
ATCATTCGTTTGCGCGCGGGCCAGTTAGTGTCCATATCAT
FMO05133.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)mbn-RB | 2321 | CG12755-RB | 247..1140 | 41..934 | 4470 | 100 | Plus |
| l(3)mbn-RD | 1568 | CG12755-RD | 247..702 | 41..496 | 2280 | 100 | Plus |
| l(3)mbn-RE | 2150 | CG12755-RE | 247..700 | 41..494 | 2270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6125386..6125993 | 934..327 | 3040 | 100 | Minus |
| 3L | 28110227 | 3L | 6126354..6126499 | 326..181 | 730 | 100 | Minus |
| 3L | 28110227 | 3L | 6128357..6128469 | 186..74 | 550 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:18 has no hits.
FMO05133.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:03 Download gff for
FMO05133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbn-RB | 247..1140 | 41..934 | 100 | -> | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:37 Download gff for
FMO05133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbn-RC | 59..1007 | 41..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:32 Download gff for
FMO05133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbn-RB | 247..1140 | 41..934 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:32 Download gff for
FMO05133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6125386..6125993 | 327..934 | 100 | <- | Minus |
| 3L | 6126354..6126497 | 183..326 | 100 | <- | Minus |
| 3L | 6128361..6128469 | 74..182 | 100 | <- | Minus |
| 3L | 6128529..6128561 | 41..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:03 Download gff for
FMO05133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6119454..6119597 | 183..326 | 100 | <- | Minus |
| arm_3L | 6121461..6121569 | 74..182 | 100 | <- | Minus |
| arm_3L | 6121629..6121661 | 41..73 | 100 | | Minus |
| arm_3L | 6118486..6119093 | 327..934 | 100 | <- | Minus |
