FMO05134.5prime Sequence
1254 bp (1001 high quality bases) assembled on 2008-08-22
> FMO05134.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCCAGGCATTTA
GTTGCCAGCTGCCTTCTGCTGGCTTTGGGTCTGAACATGAGCCTGGCGGC
GATTCACAAGCGCAGTGGTGCGAATTCGTTGGGAGTGGATCCCGAGGGCA
AGCCTGCGGCGAATCCTGCGGTCAGTGTGGAGAACACTGACCTGCTGGAC
AAGCTGAGCTGGAAGTGCGCAAACAACGCGAGTTGCCTGTACGGGGTGGC
CAATGGTCTCATGGCCTCCTACCGTCGTGGTGAAACCCTCAAGCTGGGGC
TTTTCGACCTGGTCAAGTTGCCCGAACTAGATGCTTCTCGGAAGCACAAG
TGGGGCACTGGGCGCGGTCTCTCCGGCTTTATGGACTTTGTGACGGAAAA
CGCCATCAGGGTGCCCGTGGGCCCCATGGTCTTCAGTGTTCAGCGAGCCG
AGGACGACAGCGATTATATCGAGGTAGCACTGCTGAAAAAGACCTCCAGC
AGCACAGGCCGCCTGCAGGTCAATGGAGGAGGACTACTGGGCGGTGGAGG
TGGCCTGGGAGGAAATGGTGGCGGTGGAGGAGGCCTGCTGGGCGGCGGAG
GTGGTGACAATGGCGGCGGAGGCGGTCTTCTGGGCGGACGGAGGCGGCAC
CAGCACCAGGACAAGAAGCAGTTCCAGATGTTCATACCCATGTACCTGGC
GGCCACAACATTCGGGTGGACGATGGTGGCCGCAAAGGCGGTGGGGCTCC
TGACTCTCAAGGCTCTGATCCTGTCCAAATTGCCTTCGTGGTAGCCGCAA
TAGTGTTGATCAAGAAGCTCATGGACAACGCCAGCGAAAGATGATGTACC
AGTTCCCGGAACAGACGCCGTACATGATGCCGTACGGCATGGACTTTCCG
CTTCATGGAGCGAAATTATCGGCGGGAAATGGTCCCGTCATCGCTGCACC
ACCTGGCGATGGCCGGAGGCGGCCAGCTGCCATGACATCCCGGACATCCG
GGACTGGAGAAGTCTGACGCCGAAAGCCCCCTGCACTTCGCCCAGGGTGT
CAAGCGACGGCAGCATAACCACAGGTGCTCCGCCGCTGGTTGTCTTGGTG
GACTGGGAACAAGATCACGTGAGACCTGGGATTGCAAACCCTCCCGCCCG
GGACCTGTATCTAAACTACGTGCAACCAATGCGTATACGGCACGCGTCGG
AGCTTCTATGAACATTCGTTGTGGCGCGGCCAGGTATGGGCTTATCATAC
ACAT
FMO05134.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi4-RA | 1516 | CG10303-RA | 120..1277 | 36..1178 | 4985 | 96.5 | Plus |
| Osi4-RB | 1522 | CG10303-RB | 120..1206 | 36..1117 | 4945 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6221190..6221662 | 508..36 | 2365 | 100 | Minus |
| 3R | 32079331 | 3R | 6220221..6220557 | 839..504 | 1635 | 99.7 | Minus |
| 3R | 32079331 | 3R | 6219706..6219929 | 1065..840 | 770 | 93.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:22 has no hits.
FMO05134.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:55 Download gff for
FMO05134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi4-RA | 120..1288 | 36..1185 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:23 Download gff for
FMO05134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi4-RA | 120..1288 | 36..1185 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:33 Download gff for
FMO05134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi4-RA | 120..1288 | 36..1185 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:33 Download gff for
FMO05134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6219641..6219929 | 840..1123 | 91 | <- | Minus |
| 3R | 6220220..6220553 | 508..839 | 99 | <- | Minus |
| 3R | 6221191..6221669 | 26..507 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:55 Download gff for
FMO05134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2045363..2045651 | 840..1123 | 91 | <- | Minus |
| arm_3R | 2045942..2046275 | 508..839 | 99 | <- | Minus |
| arm_3R | 2046913..2047391 | 26..507 | 98 | <- | Minus |
