FMO05135.5prime Sequence
1219 bp (1011 high quality bases) assembled on 2008-08-22
> FMO05135.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGCACAGCTGT
TTTGCTGCCACTTTTGGCCCTGCTGGCGGTGGCTCAGGCCGTTTCCTTCG
CCGACGTGGTCATGGAGGAATGGCATACGTTCAAGCTGGAGCACCGCAAG
AACTATCAGGATGAAACCGAGGAGCGTTTCCGCCTCAAGATCTTCAATGA
GAACAAGCACAAGATTGCCAAGCACAACCAGCGATTCGCCGAGGGCAAGG
TGAGCTTCAAACTGGCGGTCAATAAGTACGCCGATTTGCTGCACCACGAA
TTCCGTCAGCTGATGAACGGCTTCAACTACACTCTGCACAAGCAACTGCG
TGCCGCCGATGAAAGCTTCAAGGGAGTCACCTTCATCTCGCCGGCTCATG
TGACGCTGCCCAAATCTGTGGACTGGCGCACCAAGGGAGCTGTGACCGCC
GTCAAGGATCAGGGACACTGCGGCAGCTGCTGGGCCTTCTCCAGCACAGG
CGCCCTCGAGGGTCAGCATTTCCGCAAGTCCGGTGTCCTCGTCTCGCTGT
CCGAGCAGAATCTGGTCGATTGCTCCACCAAGTACGGCAACAATGGATGC
AACGGCGGTCTCATGGACAATGCCTTCCGCTATATTAAGGATAATGGAGG
CATCGATACCGAGAAGTCCTATCCCTACGAGGCCATCGATGACTCGTGCC
ACTTTAACAAGGGCACAGTCGGAGCCACCGATCGTGGATTCACCGATATT
CCCCAGGGTGATGAGAAGAAGATGGCCGAGGCTGTGGCCACCGTTGGTCC
CGTTTCCGTCGCCATCGATGCCTCCCACGAGTCGTCCAGTTCTACTCGGA
GGGCGTCTACAACGAGCCGCAGTGTGATGCCCAGAATCAGGATCACGGTG
TGCTGGTCGTTGGCTTCAGCACCGACGAGTCCGGCGAGGATTACTGGCTG
TGAGAACTCGTGGGCACCACTTGGGCGACAGGGCTTCATCAGATGCTGCG
CAACAAGAGAACAGTGCGGCATCGCTAGCGCCTCAGCTATCCCTGGTTCG
CAGCTTTCTAGACATTCGTTGGCCCGGGGGCCCAGTAGTGTCCTATCTAT
CTTATCTATCTATTCACAACTAGCTAGAATCTGTCATGACATATGCCTGG
ATTCCAATACATCTGGGCATCGACTTGAACAATCCAATGGATACGGTGAG
CCTATACGCTGTGCTACTA
FMO05135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp1-RC | 1369 | CG6692-RC | 104..1120 | 37..1043 | 4790 | 98.7 | Plus |
| Cp1-RA | 1486 | CG6692-RA | 221..1237 | 37..1043 | 4790 | 98.7 | Plus |
| Cp1-RD | 1481 | CG6692-RD | 313..1232 | 134..1043 | 4305 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13967029..13967722 | 350..1034 | 2980 | 98 | Plus |
| 2R | 25286936 | 2R | 13966753..13966969 | 134..350 | 1085 | 100 | Plus |
| 2R | 25286936 | 2R | 13962238..13962336 | 37..135 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:18 has no hits.
FMO05135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:51 Download gff for
FMO05135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RA | 215..1249 | 27..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:24 Download gff for
FMO05135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RC | 98..1132 | 27..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:15 Download gff for
FMO05135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RA | 215..1249 | 27..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:15 Download gff for
FMO05135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13962232..13962336 | 27..135 | 96 | -> | Plus |
| 2R | 13966755..13966969 | 136..350 | 100 | -> | Plus |
| 2R | 13967030..13967735 | 351..1045 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:51 Download gff for
FMO05135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9849737..9849841 | 27..135 | 96 | -> | Plus |
| arm_2R | 9854260..9854474 | 136..350 | 100 | -> | Plus |
| arm_2R | 9854535..9855240 | 351..1045 | 98 | -> | Plus |
